Dataset: Sampling and experimental metadata related to 'Candidatus' Aquarickettsia rohweri transcriptome data from host Acropora cervicornis colonies collected at Looe Key, Lower Florida Keys from Apr to Jun of 2019

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.928636.1Version 1 (2024-05-24)Dataset Type:experimental

Principal Investigator: Rebecca Vega Thurber (Oregon State University)

Co-Principal Investigator: Erinn M. Muller (Mote Marine Laboratory)

Scientist: Grace J. Klinges (Mote Marine Laboratory)

Scientist: Lauren Speare (Oregon State University)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility (Coral Rickettsiales)

Abstract

This dataset contains sampling and experimental metadata related to 'Candidatus' Aquarickettsia rohweri transcriptome sequences housed at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under BioProject PRJNA1048415. All host colonies (Acropora cervicornis genotype ML-50) were collected from the same location, the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys between April and June of 2019. The Rickettsiales-like bacterial pa...

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Cite Dataset

These Ca. Aquarickettsia rohweri transcriptome data were published in Speare et al, (2023, doi: 10.1101/2023.06.08.544262) and are part of NCBI BioProject PRJNA1048415. 

Closely related data also part of the same NCBI BioProject were published in Klinges et al. (2023, doi: 10.1093/femsec/fiac013) which published the experiment and accompanying data (16S, coral health status, coral growth rate) from the same samples.

Related Datasets

IsRelatedTo
Dataset: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA1048415
Oregon State University. (2023). Ca. Aquarickettsia rowheri transcriptome. NCBI:BioProject: PRJNA1048415 [Internet]. Bethesda, MD: National Library of Medicine (US), National Center for Biotechnology Information; Available from: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA1048415

Related Publications

Results
Speare, L., Klinges, J. G., Duke, W. C., Muller, E. M., & Thurber, R. L. V. (2023). Nutrient enrichment alters gene expression in ‘Ca.’ Aquarickettsia rohweri, promoting parasite expansion and horizontal transmission. https://doi.org/10.1101/2023.06.08.544262
Methods
Klinges, J. G., Patel, S. H., Duke, W. C., Muller, E. M., & Vega Thurber, R. L. (2022). Phosphate enrichment induces increased dominance of the parasite Aquarickettsia in the coral Acropora cervicornis. FEMS Microbiology Ecology, 98(2). https://doi.org/10.1093/femsec/fiac013
Methods
Moura, A., Beck, B., Duffey, R., McEachron, L., Miller, M., Moore, J., Moulding, A., & Winters, R. S. (2021). Integrating Coral Restoration Data With a Novel Coral Sample Registry. Frontiers in Marine Science, 8. https://doi.org/10.3389/fmars.2021.700172

Vega Thurber, R., Muller, E. M., Klinges, G. J., Speare, L. (2025) Sampling and experimental metadata related to 'Candidatus' Aquarickettsia rohweri transcriptome data from host Acropora cervicornis colonies collected at Looe Key, Lower Florida Keys from Apr to Jun of 2019. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-05-24 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.928636.1 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation