Field measurements of periostracum cover of mussels (Mytilus californianus) from focal population at Marshall Gulch Beach, CA in July and August 2022

Website: https://www.bco-dmo.org/dataset/935484
Data Type: Other Field Results
Version: 1
Version Date: 2024-12-26

Project
» Invertebrate calcification and behavior in seawater of decoupled carbonate chemistry (OA decoupling)
ContributorsAffiliationRole
Gaylord, BrianUniversity of California - Davis: Bodega Marine Laboratory (UC Davis-BML)Principal Investigator
Saley, AlishaUniversity of California - Davis: Bodega Marine Laboratory (UC Davis-BML)Student
Merchant, Lynne M.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
These data build off of experimental incubations described in Dataset 1 and 2. To contextualize laboratory incubations, we measured periostracum cover of live California mussels from multiple microhabitats (relative tidal height and degree of sun exposure) in our focal sample population. This dataset represents periostracum cover measurements of California Mussels, Mytilus californianus, conducted at Marshall Gulch Beach, CA in July and August 2022. Dataset 1: Lab incubations of mussels (Mytilus californianus) examining the influence of periostracum cover and pH on external shell dissolution at Marshall Gulch Beach, CA from August 2021 to March 2022 (see BCO-DMO related dataset) Dataset 2: Lab incubations of mussels (Mytilus californianus) examining the influence of periostracum cover and pH on external shell dissolution at Marshall Gulch Beach, CA from August 2021 to March 2022 (see BCO-DMO related dataset)


Coverage

Location: Marshall Gulch Beach, California
Spatial Extent: Lat:38.369738 Lon:-123.073921
Temporal Extent: 2022-07-17 - 2022-08-18

Methods & Sampling

To provide ecological context for the laboratory dissolution experiments, we also measured the percent cover of periostracum of living California Mytilus californianus mussels in the field, focusing on mussels inhabiting different microhabitats within the intertidal zone. We sampled mussels across two tidal heights and three levels of sun exposure on 17 July and 18 August 2022 from the same population (Marshall Gulch Beach, California) where we had collected mussels for the laboratory trials (see the related BCO-DMO datasets). We sampled from the topmost layer of mussels within a 20 cm x 20 cm quadrat positioned within the center of each of 8 mussel beds at each tidal height (characterized as ‘high’ or low’, -0.3 – +0 m sea level height (SLH) and  +0.3 - +1 m SLH), haphazardly choosing the first 20 adult individuals within a pre-selected size range (n = 113 mussels total, 54 mm + 4 mm SD). We characterized sun exposure based on the cardinal direction of the mussel bed orientation, which included mussels oriented 200° – 240° SW (termed ‘intense’), 30° – 70° NE (termed ‘average’), and 300° – 340° NW (termed ‘shade’). We photographed both valves of each mussel, ensuring a scale bar was visible in the field of view for use in ImageJ, and averaged the coverage of periostracum across the two valves as the metric of percent cover for a given individual.


Data Processing Description

Data analysis:

We performed computations with R statistical software, RStudio version 2023.06.2. We used a two-way ANOVA to compare average periostracum cover in adult mussels collected from the field at two relative tidal heights and three levels of sun exposure. We omitted the interaction term between the treatments after confirming it failed to explain significant variability in the model. Using tidal height and sun exposure as categorical predictors to explain periostracum cover, we then ran a TukeyHSD test (95% confidence) to identify which microhabitat types differed from one another via post-hoc, pairwise comparisons.


BCO-DMO Processing Description

1) Processed the submitted file named ave.field_PUB.csv with the BCO-DMO tool Laminar.

BCO-DMO parameter naming convention is for names to only include alphanumeric characters and underscores. Periods in the parameter names have been replaced with underscores.

peri.sa renamed to peri_percent to clarify it represents a percent.

shell.l renamed to shell_L_avg to clarify it's an average

sa.tot renamed to shell_A_avg to clarify it's an average

Saved dataset to primary data file named 935484_v1_measurements_of_mussels_periostracum_cover.csv

2) Checked species taxonomy of mussel collected, Mytilus californianus, and created a taxonomy file using information from the World Register of Marine Species (WoRMS: marinespecies.org) with columns: ScientificName, AphiaID, LSID, Authority, Kingdom, Phylum, Class, Order, Family, Genus, Species


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Data Files

File
935484_v1_measurements_of_mussels_periostracum_cover.csv
(Comma Separated Values (.csv), 11.28 KB)
MD5:bcbf09663cc0aa1dac19ac7b58dad6d0
Primary data file for dataset ID 935484, version 1

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Supplemental Files

File
Species taxonomy
filename: species_taxonomy.csv
(Comma Separated Values (.csv), 240 bytes)
MD5:6adb15fd7f2eba705b30b09b7a827689
Species taxonomy from the World Register of Marine Species (WoRMS: marinespecies.org) with columns: ScientificName, AphiaID, LSID, Authority, Kingdom, Phylum, Class, Order, Family, Genus, Species

Column descriptions

ScientificName: Genus and Species name
AphiaID: Unique taxonomic identifier at the World Register of Marine Species (WoRMS: marinespecies.org)
LSID: The Life Sciences Identifier (LSID) is an Interoperable Informatics Infrastructure Consortium (I3C) and OMG Life Sciences Research (LSR) Uniform Resource Name (URN) specification in progress.
Authority: The taxonomic authority is the surname of the person who first described the species

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Related Publications

R Core Team (2023). R: A language and environment for statistical computing. R v4.3.1 (2023-06-01). R Foundation for Statistical Computing, Vienna, Austria. URL https://www.r-project.org/
Software
Schneider, C. A., Rasband, W. S., & Eliceiri, K. W. (2012). NIH Image to ImageJ: 25 years of image analysis. Nature Methods, 9(7), 671–675. https://doi.org/10.1038/nmeth.2089
Software

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Related Datasets

IsRelatedTo
Saley, A., Gaylord, B. (2024) Lab incubations of mussels (Mytilus californianus) examining the influence of periostracum cover and pH on external shell dissolution at Marshall Gulch Beach, CA from August 2021 to March 2022. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-12-28 doi:10.26008/1912/bco-dmo.935476.1 [view at BCO-DMO]
Relationship Description: Mussels from the same population as Dataset 2 & Dataset 3 examining the influence of periostracum cover and pH on external shell dissolution
Saley, A., Gaylord, B. (2024) Lab incubations of mussels (Mytilus californianus) examining the influence of simulated abrasion of periostracum on external shell dissolution at Marshall Gulch Beach, CA from August 2021 to March 2022. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-12-28 doi:10.26008/1912/bco-dmo.935480.1 [view at BCO-DMO]
Relationship Description: Mussels from the same population as Dataset 1 and Dataset 3 examining the influence of simulated abrasion of periostracum on external shell dissolution

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Parameters

ParameterDescriptionUnits
ID

Shell ID: identification number of individual mussel valve

unitless
species

Mussel species

unitless
lat

latitude, South is negative

deicmal degrees
lon

longitude, West is negative

decimal degrees
date_start

collection start date

unitless
date_end

collection end date

unitless
light

Microhabitat: sun exposure based on the cardinal direction of the mussel bed orientation, which included mussels oriented 200° – 240° SW (termed ‘intense’), 30° – 70° NE (termed ‘average’), and 300° – 340° NW (termed ‘shade’): N (shady), M (average), or F (intense)

unitless
height

Microhabitat: tidal height: tidal height characterized as ‘high’ (HT) or low’ (LT) based on measured sea level height (-0.3 – +0 m sea level height (SLH) and  +0.3 - +1 m SLH)

unitless
peri_percent

Periostracum cover: percent cover of intact periostracum over mussel valve

percentage (%)
shell_L_avg

Valve length: average value between longest measured length of both mussel valves (ImageJ)

milimeter (mm)
shell_A_avg

Shell area: average mussel valve area measurement between both mussel valves (ImageJ)

milimeters squared (mm^2)


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Instruments

Dataset-specific Instrument Name
camera
Generic Instrument Name
Camera
Generic Instrument Description
All types of photographic equipment including stills, video, film and digital systems.


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Project Information

Invertebrate calcification and behavior in seawater of decoupled carbonate chemistry (OA decoupling)

Coverage: California coast, USA


NSF Award Abstract:
This research is exploring the capacity of coastal organisms to cope with alterations in seawater chemistry driven by both freshwater inputs and absorption of carbon dioxide into the world's oceans (ocean acidification). The project focuses on calcification responses and behavioral impairments of shoreline animals under altered seawater chemistry, and forefronts a common mussel species (the California mussel), and a common snail (the black turban snail), each abundant on rocky shores along the west coast of North America. The target species operate as exemplar organisms for characterizing the responses of marine invertebrates more generally. Methods involve experimental decoupling of multiple components of the carbonate system of seawater to isolate drivers that are difficult to separate otherwise. Broader impacts include transfer of scientific information to policy-makers, including legislators, as well as training and skill-set development of future generations of scientists and citizens. One Ph.D. student is supported, as are UC Davis undergraduates conducting mentored research. The project also provides research internships for undergraduates from a local community college (Santa Rosa Junior College), many of whom are from underrepresented groups. The latter project component substantially bolsters an ongoing program at Bodega Marine Laboratory that includes efforts in diversity, equity, and inclusion. Data and interpretations from the project are feeding into an existing educational program that links to local K-12 schools and reaches ~10,000 members of the public each year.

Overall, the research of the project is dissecting drivers of calcification and behavioral disruption in key shoreline invertebrates, across present-day and future carbonate system conditions appropriate to coastal marine environments. Efforts are exploring the extent to which calcification depends on one versus multiple parameters of the seawater carbonate system. In particular, existing conceptual models emphasize the importance of calcium carbonate saturation state (Ω) and/or the ratio of bicarbonate to hydrogen ion concentrations ([HCO3-]/[H+]), and the project is examining these mechanisms as well as the possibility that more than one driver acts simultaneously. It is doing so both in bivalves and in gastropods to test for generality across mollusks. The project is additionally examining whether pH is the only carbonate system factor contributing to known patterns of behavioral impairment in marine invertebrates. Leading explanations for debilitating behaviors induced by ocean acidification involve altered ion channel function, but discussion in the literature continues, and studies that explicitly decouple the carbonate system are necessary.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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