Number and mass of eelgrass seeds collected from sediment cores in shallow and deep zones at four coastal sites in Massachusetts, USA in 2019

Website: https://www.bco-dmo.org/dataset/939488
Data Type: Other Field Results
Version: 1
Version Date: 2024-10-03

Project
» RUI: Collaborative Research: Trait differentiation and local adaptation to depth within meadows of the foundation seagrass Zostera marina (ZosMarLA)
ContributorsAffiliationRole
Hays, CynthiaKeene State College (Keene)Principal Investigator, Contact
Hanley, Torrance C.Northeastern UniversityCo-Principal Investigator
Hughes, A. RandallNortheastern UniversityCo-Principal Investigator
Sotka, ErikGrice Marine Laboratory - College of Charleston (GML-CoC)Co-Principal Investigator
York, Amber D.Woods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
This dataset includes the number and mass of eelgrass seeds collected from sediment cores in shallow and deep zones at four different sites in Massachusetts, USA in 2019. The four sites were West Beach in Beverly (N 42.55921, W 70.80578), Curlew Beach in Nahant (N 42.42009, W 70.91553), Lynch Park in Beverly (N 42.54488, W 70.85842), and Niles Beach in Gloucester (N 42.59711, W 70.65592). Like many marine foundation species, eelgrass often spans strong environmental gradients over relatively small spatial scales - this data set provides information on seed retention and seed size across the depth gradient at multiple sites in the Gulf of Maine. Seeds measured and counted in this dataset were subsequently genotyped to infer source.


Coverage

Location: coastal sites in the Gulf of Maine, USA
Spatial Extent: N:42.59711 E:-70.65592 S:42.42009 W:-70.91553
Temporal Extent: 2019-09-24 - 2019-09-28

Methods & Sampling

Location description: Four coastal sites in the Gulf of Maine, USA, that sustain continuous eelgrass meadows across a depth gradient of ~1-2 m below MLLW to ~4-5.5 m below MLLW (see Supplemental File "Site List" for site codes used in this dataset and coordinates (lat,lon)).

Divers on SCUBA cored for dispersed eelgrass seeds at four different eelgrass beds in Massachusetts in September 2019, within the same permanent sampling grids established and sampled for shoot density and morphology earlier in the summer. The four sites were West Beach in Beverly (N 42.55921, W 70.80578), Curlew Beach in Nahant (N 42.42009, W 70.91553), Lynch Park in Beverly (N 42.54488, W 70.85842), and Niles Beach in Gloucester (N 42.59711, W 70.65592), and cores were collected in permanent quadrats previously established in both the shallow and deep zone at each site, defined by proximity to the respective edges of the eelgrass beds. 

Each core was 10 cm in diameter and 10 cm in depth; divers collected cores at 3 locations within each grid at Curlew Beach, and at 4 locations within each grid at the other three field sites (n = 9 or 12 cores per depth). The sediment cores were bagged and kept cold (4ºC) until they could be processed; each core was hand-sieved for intact seeds within three days of collection. We counted all intact seeds encountered and assessed viability by firmness. Seeds that were deemed viable were individually weighed and stored in microfuge tubes and frozen at -80ºC until DNA extraction.

Organism: 
eelgrass, Zostera marina, urn:lsid:marinespecies.org:taxname:495077


BCO-DMO Processing Description

* Data from "seedPhenotypes.csv" was imported into the BCO-DMO data system for this dataset.

* A Site list was extracted from metadata and added as a supplemental file.

* The site code was used to join the lat and lon for each site into the primary data table for this dataset (939488_v1_eelgrass-seed-phenotypes.csv) from the supplemental site list.

* Coordinate for Lynch Park in Beverly corrected from (42.42009,-70.91553) to (42.54488,-70.85842). New coordinate was provided by the data submitter.


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Data Files

File
939488_v1_eelgrass-seed-phenotypes.csv
(Comma Separated Values (.csv), 9.07 KB)
MD5:1fa8c62621bf23c05314d6ce388dc578
Primary data file for dataset ID 939488, version 1

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Supplemental Files

File
Site List
filename: site_list.csv
(Comma Separated Values (.csv), 234 bytes)
MD5:0cba40568ee8de4c0b6b7bc23e1745a3
Site list containing columns: Site_Code, Site code as used in Data File for this dataset Site_Description, Site description lat, latitude, decimal degrees lon, longitude, decimal degrees.

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Related Publications

Sotka, EE, Hughes, AR, Hanley, TC, and CG Hays (n.d.). Restricted dispersal and phenotypic response to water depth in a foundation seagrass. In review, Molecular Ecology.
Results

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Related Datasets

IsRelatedTo
Sotka, E., Hughes, A. R., Hanley, T. C., Hays, C. (2024) Eelgrass shoot lengths measured at two depths within each of four coastal sites in Massachusetts, USA in 2019. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-10-03 doi:10.26008/1912/bco-dmo.939440.1 [view at BCO-DMO]
Relationship Description: Data from the same locations as part of the same eelgrass study in 2019.
Sotka, E., Hughes, A. R., Hanley, T. C., Hays, C. (2024) Quadrat-based measurements of eelgrass shoot density and above-ground biomass for plants growing in shallow and deep zones at four coastal sites in Massachusetts, USA in 2019. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-10-03 doi:10.26008/1912/bco-dmo.939467.1 [view at BCO-DMO]
Relationship Description: Data from the same locations as part of the same eelgrass study in 2019.

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Parameters

ParameterDescriptionUnits
Date

The date of sample collection

unitless
Site

Site Code (see supplemental file "Site List" for more details)

unitless
lat

Site latitude

decimal degrees
lon

Site longitude

decimal degrees
Depth

Nominal depth=SH (shallow zone) or DP (deep zone)

unitless
Permanent_Quad

The permanent quadrat identifier the sample came from, three per depth per site.

unitless
Core

Core identifier

unitless
Seed_number

An identifier and running count of seeds collected from within the same core.

unitless
Mass

The fresh mass of the seed, in grams, measured to the nearest 0.1 milligram.

grams (g)
RAD_name

If the seed was subsequently genotyped, this is the associated sample name. Seeds that were not genotyped have a blank entry in this column.

unitless

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Project Information

RUI: Collaborative Research: Trait differentiation and local adaptation to depth within meadows of the foundation seagrass Zostera marina (ZosMarLA)

Coverage: Massachusetts, USA


NSF Award Abstract:
Understanding how species cope with spatial variation in their environment (e.g. gradients in light and temperature) is necessary for informed management as well as for predicting how they may respond to change. This project will examine how key traits vary with depth in common eelgrass (Zostera marina), one of the most important foundation species in temperate nearshore ecosystems worldwide. The investigators will use a combination of experiments in the field and lab, paired with fine-scale molecular analyses, to determine the genetic and environmental components of seagrass trait variation. This work will provide important information on the microevolutionary mechanisms that allow a foundation species to persist in a variable environment, and thus to drive the ecological function of whole nearshore communities. The Northeastern University graduate and Keene State College (KSC) undergraduate students supported by this project will receive training in state-of-the-art molecular techniques, as well as mentorship and experience in scientific communication and outreach. A significant portion of KSC students are from groups under-represented in science. Key findings of the research will be incorporated into undergraduate courses and outreach programs for high school students from under-represented groups, and presented at local and national meetings of scientists and stakeholders.

Local adaptation, the superior performance of "home" versus "foreign" genotypes in a local environment, is a powerful demonstration of how natural selection can overcome gene flow and drift to shape phenotypes to match their environment. The classic test for local adaptation is a reciprocal transplant. However, such experiments often fail to capture critical aspects of the immigration process that may mediate realized gene flow in natural systems. For example, reciprocal transplant experiments typically test local and non-local phenotypes at the same (often adult) life history stage, and at the same abundance or density, which does not mirror how dispersal actually occurs for most species. In real populations, migrants (non-local) often arrive at low numbers compared to residents (local), and relative frequency itself can impact fitness. In particular, rare phenotypes may experience reduced competition for resources, or relative release from specialized pathogens. Such negative frequency dependent selection can reduce fitness differences between migrants and residents due to local adaptation, and magnify effective gene flow, thus maintaining greater within-population genetic diversity. The investigators will combine spatially paired sampling and fine-scale molecular analyses to link seed/seedling trait variation across the depth gradient at six meadows to key factors that may drive these patterns: local environmental conditions, population demography, and gene flow across depths. The team will then experimentally test the outcome of cross-gradient dispersal in an ecologically relevant context, by reciprocally out-planting seeds from different depths and manipulating relative frequency in relation to both adults and other seedling lineages. The possible interaction between local adaptation and frequency-dependence is particularly relevant for Zostera marina, which represents one of the best documented examples of the ecological effects of genetic diversity and identity. Further, a better understanding of seagrass trait differentiation is not simply a matter of academic interest, but critical to successful seagrass restoration and conservation.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)
NSF Division of Ocean Sciences (NSF OCE)
NSF Division of Ocean Sciences (NSF OCE)

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