In situ infauna abundance and biomass of experimental sediment chambers acquired in the shallow subtidal shore-accessible site in Bon Secour Bay, Mobile Bay, Alabama, USA between August 7-12, 2021

Website: https://www.bco-dmo.org/dataset/941067
Data Type: Other Field Results
Version: 1
Version Date: 2025-04-23

Project
» CAREER: Mechanisms of bioturbation and ecosystem engineering by benthic infauna (Bioturbation and Ecosystem Engineering)
ContributorsAffiliationRole
Gadeken, KaraUniversity of South Alabama; and Dauphin Island Sea Lab (USA-DISL)Student, Contact
Soenen, KarenWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
This dataset is part of a field study examining the effect of diel oxygen cycling on faunal activity, and in turn sediment oxygen demand. The field experiment used in situ flow-through benthic chambers to measure oxygen consumption. The chambers were deployed and retrieved in three ~24 hour deployments in a shallow subtidal area of Bon Secour Bay in Mobile Bay, AL, in August 2021. This dataset contains the abundances of all macrofaunal taxa as well as the total biomass and the biomass of some major taxa found in each of the chambers. The Abunance data have not been normalized to meters squared. The biomass values have been normalized to meters squared from the values taken from the chambers, which occupy a smaller area.


Coverage

Location: Shallow subtidal shore-accessible site in Bon Secour Bay, Mobile Bay, AL, USA
Spatial Extent: Lat:30.239478 Lon:-87.894094

Methods & Sampling

This dataset is part of a field study examining the effect of diel oxygen cycling on faunal activity, and in turn sediment oxygen demand. The field experiment used in situ flow-through benthic chambers to measure oxygen consumption, as described in the methods paper Gadeken et al 2023.

The chambers were deployed and retrieved in three ~24 hour deployments in a shallow subtidal area of Bon Secour Bay in Mobile Bay, AL, in August 2021.

This dataset contains the abundances of all macrofaunal taxa as well as the total biomass and the biomass of some major taxa found in each of the chambers. The Abunance data have not been normalized to meters squared. The biomass values have been normalized to meters squared from the values taken from the chambers, which occupy a smaller area.


BCO-DMO Processing Description

* Combined abundance and biomass data
* Added approximate sampling location (latitude & longitude) to dataset


Problem Description

* The flush mechanism for chamber 1 malfunctioned during all three deployments of the system

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Data Files

File
941067_v1_infauna.csv
(Comma Separated Values (.csv), 1.95 KB)
MD5:c262a9edd4913f615edcadacdab21be6
Primary data file for dataset ID 941067, version 1

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Supplemental Files

File
Infaunal Abundance Data
filename: InfaunaAbundanceData.xlsx
(Microsoft Excel, 9.57 KB)
MD5:c600077c3cb18c563fb6e62c3b33a22f
Original infauna abundance file, in format required for code input.
Infaunal Biomass Data
filename: InfaunaBiomassData.xlsx
(Microsoft Excel, 9.87 KB)
MD5:d7a31fb0b1795e0f117485d37068b46a
Original infauna biomass file, in format required for code input.

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Related Publications

Gadeken, K. J., Lockridge, G., & Dorgan, K. M. (2023). An in situ benthic chamber system for improved temporal and spatial resolution measurement of sediment oxygen demand. Limnology and Oceanography: Methods, 21(11), 645–655. Portico. https://doi.org/10.1002/lom3.10571
Results

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Related Datasets

IsSourceOf
Gadeken, K. (2025) Processed dissolved oxygen and infauna of experimental chambers and ambient sensors acquired in the shallow subtidal shore-accessible site in Bon Secour Bay, Mobile Bay, Alabama, USA between August 7-12, 2021. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2025-04-21 doi:10.26008/1912/bco-dmo.940735.1 [view at BCO-DMO]
Relationship Description: Combined processed dissolved oxygen and infauna data from sediment chamber experiment.

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Parameters

ParameterDescriptionUnits
Sampling_Date

Sample date in ISO format

unitless
Latitude

Latitude of approximate sampling location, south is negative

decimal degrees
Longitude

Longitude of approximate sampling location, west is negative

decimal degrees
Sample_ID

replicate named for deployment (here "run") number and chamber number

unitless
JuvenileCrab

Number of juvenile crabs (all species) in chamber extracted after deployment

individuals per chamber
Shrimp

Number of shrimp (all species) in chamber extracted after deployment

individuals per chamber
Amphipoda

Number of amphipoda (all species) in chamber extracted after deployment

individuals per chamber
Corophiidae

Number of corophiidae (all species) in chamber extracted after deployment

individuals per chamber
Ampeliscidae

Number of ampeliscidae (all species) in chamber extracted after deployment

individuals per chamber
Tanaidaceae

Number of tanaidaceae (all species) in chamber extracted after deployment

individuals per chamber
Capitellidae

Number of tanaidaceae (all species) in chamber extracted after deployment

individuals per chamber
Nereididae

Number of nereididae (all species) in chamber extracted after deployment

individuals per chamber
Spionidae

Number of spionidae (all species) in chamber extracted after deployment

individuals per chamber
Phyllodocidae

Number of phyllodocidae (all species) in chamber extracted after deployment

individuals per chamber
Orbiniidae

Number of orbiniidae (all species) in chamber extracted after deployment

individuals per chamber
Tellinidae

Number of tellinidae (all species) in chamber extracted after deployment

individuals per chamber
Mactridae

Number of mactridaes (all species) in chamber extracted after deployment

individuals per chamber
Echiura

Number of echiura (all species) in chamber extracted after deployment

individuals per chamber
Microdesmidae

Number of microdesmidae (all species) in chamber extracted after deployment

individuals per chamber
Abundance

Total abundance of fauna in a chamber

individuals
Biomass_total

Total biomass of infauna in a chamber

grams per meter squared (g m-2)
Biomass_nereid

Biomass of nereididae (all species) in a chamber

grams per meter squared (g m-2)
Biomass_orbiniid

Biomass of orbiniidae (all species) in a chamber

grams per meter squared (g m-2)
Biomass_wormfish

Biomass of microdesmidae (wormfish) in chamber

grams per meter squared (g m-2)
Biomass_other

Biomass of all other infauna excepting nereids, orbiniids, and wormfish

grams per meter squared (g m-2)
Richness

Number of discrete taxa identified in chamber infauna (mostly family level)

taxon
SW_Diversity

Calculated Shannon-Weiner diversity index for infauna in chamber

unitless
Mean

Average of all high-quality SOD measurements in the deployment for a chamber

mmol m-2 d-1
StDev

Standard Deviation of all high-quality SOD measurements in deployment for a chamber

mmol m-2 d-1


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Instruments

Dataset-specific Instrument Name
Generic Instrument Name
benthic incubation chamber
Dataset-specific Description
This project used a custom built field deployable benthic chamber system. Construction and functioning of the system are outlined in Gadeken et al 2023 L&O:Methods.
Generic Instrument Description
A device that isolates a portion of seabed plus overlying water from its surroundings. Either returns the entire system to the surface or incorporates sampling devices and/or in-situ sensors.


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Project Information

CAREER: Mechanisms of bioturbation and ecosystem engineering by benthic infauna (Bioturbation and Ecosystem Engineering)

Coverage: Dauphin Island Sea Lab, Dauphin Island, AL


NSF Award Abstract:
Marine sediments are important habitats for abundant and diverse communities of organisms that are important as food sources for higher trophic levels, including commercially important species. Through burrowing, constructing tubes, and feeding on sediments, these animals modify their physical and chemical environments to such an extent that they are considered ecosystem engineers. Bioturbation, the mixing of sediments by animals, is important in regenerating nutrients and transporting pollutants and carbon bound to mineral grains. Despite its importance, our ability to predict bioturbation rates and patterns from the community structure is poor, largely due to a lack of understanding of the mechanisms by which animals mix sediments. This project builds on earlier work showing that animals extend burrows through muddy sediments by fracture to test the hypothesis that the mechanical properties of sediments that affect burrowing mechanics also affect sediment mixing. More broadly, this project examines the relative contributions of (i) the functional roles of the organisms in the community, (ii) the mechanical properties of sediments, and (iii) factors that might increase or decrease animal activity such as temperature and food availability to bioturbation rates. Burrowing animals modify the physical properties of sediments, and this project quantifies these changes and tests the hypothesis that these changes are ecologically important and affect community succession following a disturbance. In addition to this scientific broader impact, this project involves development of instrumentation to measure sediment properties and includes a substantial education plan to introduce graduate, undergraduate, and middle school students to the important role that technology plays in marine science.

Through burrowing and feeding activities, benthic infauna mix sediments and modify their physical environments. Bioturbation gates the burial of organic matter, enhances nutrient regeneration, and smears the paleontological and stratigraphic record. However, current understanding of the mechanisms by which infaunal activities mix sediments is insufficient to predict the impacts of changes in infaunal community structure on important sediment ecosystem functions driven by bioturbation. This project tests specific hypotheses relating infaunal communities, bioturbation, and geotechnical properties with the ultimate goal of understanding the dynamic changes and potential feedbacks between infauna and their physical environments. This project integrates field and lab experiments to assess the relative importance of infaunal community structure and activities to bioturbation rates. Additionally, this project builds on recent work showing that muddy sediments are elastic gels through which worms extend burrows by fracture to propose that geotechnical properties of sediments mediate bioturbation by governing the release of particles from the sediment matrix during burrow extension. Finite element modeling determines how the release of particles by fracture during burrowing depends on the fracture toughness (cohesion) and stiffness (compaction) of sediments and complements laboratory experiments characterizing the impact of geotechnical properties on burrowing behaviors. The proposed research also aims to determine whether impacts of infauna on geotechnical properties are ecologically important. Changes in infaunal communities and geotechnical properties following an experimental physical disturbance address the hypothesis that ecosystem engineering of bulk sediment properties facilitates succession.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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