Contributors | Affiliation | Role |
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Galloway, Aaron W.E. | University of Oregon (OIMB) | Principal Investigator |
Kroeker, Kristy J. | University of California-Santa Cruz (UCSC) | Principal Investigator |
Bell, Lauren E. | University of California-Santa Cruz (UCSC) | Co-Principal Investigator |
Schram, Julie | University of Oregon (OIMB) | Co-Principal Investigator |
Yoshioka, Reyn | University of Oregon (OIMB) | Co-Principal Investigator |
York, Amber D. | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
We collected samples using SCUBA at three sites in Sitka Sound, all within 6 km of each other: Harris Island (N 57.03165, W 135.27754), Breast Island (N 57.03896, W 135.33309), and Samsing Pinnacle (N 56.98750, W 135.35718). Samples were collected during one week in two seasons: winter (January 2019) and summer (July 2019). Generally, we collected ~4 replicate samples for each species at each of the three sites in each season for fatty acids analysis. For seaweeds, this resulted in 4 replicates from one site in each season, and for invertebrates, this resulted in ~12 replicates (across 3 sites) for each season, with the exception of the isopod Pentidotea resecata in the summer, for which only one sample was collected due to a paucity of isopods residing in the seaweeds across our 3 sampling sites.
We sampled six seaweeds, including three Laminarian kelps (Ochrophyta, urn:lsid:marinespecies.org:taxname:345465) and three red algae from the Gigartinales (urn:lsid:marinespecies.org:taxname:871) and Ceramiales (urn:lsid:marinespecies.org:taxname:860), that are present in both seasons in these sites: Neoagarum fimbriatum, Macrocystis pyrifera, Hedophyllum nigripes, Cryptopleura ruprechtiana, Opuntiella californica, and Osmundea spectabilis (See supplemental species_list.csv for identifiers).
Note: "Neoagarum fimbriatum" appears as the unaccepted synonym "Agarum fimbriatum" used in this dataset.
We sampled six macro-invertebrates (two each of gastropods, crustaceans, echinoderms) that are present and dominant herbivores in these sites: Haliotis kamtschatkana, Tegula pulligo, Pentidotea resecata, Pugettia producta, Mesocentrotus franciscanus, and Strongylocentrotus droebachiensis (See supplemental species_list.csv for identifiers).
M. pyrifera blades were collected from the distal ends of the thallus near the scimitar area from a boat at the surface, but other collections were made by SCUBA divers between 5-8 m depth. In general, all seaweeds were sampled in a consistent way within each species, targeting the same general tissues, avoiding proximal and distal areas of blades, avoiding sori, holdfasts, and stipes. All seaweeds were wiped clean with a paper towel and inspected to ensure they were not contaminated by epiphytes or endophytes. Invertebrates were sacrificed by freezing (-20°) for ~30 minutes before subsequent dissection. Invertebrate tissues were sampled in a consistent way for each taxon: Haliotis were sampled by snipping the foot muscle; Tegula were crushed with a hammer and the foot muscle was snipped; whole P. resecata individuals were sampled owing to their small size; for Pugettia, muscle tissue was removed from the legs; for Mesocentrotus and Strongylocentrotus, the test was cut open and gonadal tissue sampled. Sampling equipment was wiped clean with kimwipes and ethanol between samples. All samples were placed into 1.5 ml Eppendorf tubes, which were immediately frozen in a -20°C freezer. No solvents were introduced to samples in plastic storage vials.Within 3 days, all samples were moved to a -80°C freezer where they were stored until shipment to the -80°C freezer at the Oregon Institute of Marine Biology, where all fatty acid extractions were performed.
Tissue samples were kept at -80°C until extraction; all samples for both collection efforts were extracted within 9 months of collection. Samples were lyophilized to dryness for 48 hours. Once tissues were dried they were ground to fine, homogeneous powder with a stainless-steel mortar and pestle. Homogenized tissues were then immediately digested in chloroform for ~12 hrs sealed under nitrogen at -20°C. Total lipid extraction and subsequent derivatization of fatty acid methyl esters (FAME) was performed using a modification of the method described by (Taipale et al. 2016) and briefly summarized here. All sample extractions were performed in pre-combusted glassware.
Following initial tissue digestion in chloroform, 70 ul of unmethylated nonadecanoic acid (C19) was added as an internal standard. Total lipids were extracted using a 2:1:0.75 solution of chloroform: methanol: 0.9% NaCl solution, which was subsequently sonicated, vortexed, and centrifuged so that the more dense organic layer could be removed and evaporated to dryness under a steady stream of nitrogen gas. The organic phase was immediately resuspended in toluene and 1% sulfuric acid-methanol solution for 90 minutes at 90°C to transesterify FAME. Following transesterification, solutions were cooled to room temperature and KHCO3, to neutralize the acidic solution, and hexane was added. The combined solution was then vortexed and centrifuged to separate FAME in the hexane solution, which was concentrated to 1.5 ml in glass vials for gas chromatography.
FAME were analyzed with a gas chromatograph mass spectrometer (GC-MS, Shimadzu, Model QP2020), fitted with a DB-23 column (30 x 0.25mm x 0.15 µm, Agilent, Santa Clara, CA, USA), using helium as the carrier gas. To ensure sufficient separation between fatty acid peaks we utilized a heating program modified from Taipale et al. (2016) and described by Thomas et al. (2020). Individual fatty acids were identified using relative retention times of a FAME standard (GLC 566C, Nu-Chek Prep, Elysian, MN, USA) and specific ions. Fatty acids were quantified using integration of the major ion peaks (Taipale et al. 2016) with Shimadzu Lab Solutions software. Following identification and quantification, individual peak areas for all fatty acids identified were converted to proportions, representing the % contribution of all fatty acids identified in each sample.
Shimadzu Lab Solutions software.
Note [2024-12-30] The spCode (species codes) column was not changed in the data and subsequent analysis. However, the genus and species associated with the codes were updated as follows:
* spCode "AGFIM" was originally associated with the scientific name "Agarum fimbriatum" (LSID urn:lsid:marinespecies.org:taxname:372699). The genus and species were updated in the data and metadata to use the currently accepted name for the organism "Neoagarum fimbriatum" (LSID urn:lsid:marinespecies.org:taxname:1313053).
* The scientific name associated with the code "SACCH" was updated from "Saccharina sp." to "Hedophyllum nigripes." Organisms originally identified as "Saccharina sp." were later reclassified as "Hedophyllum nigripes" (LSID urn:lsid:marinespecies.org:taxname:1356699).
* spCode "OSMUNDIA" "Osmundia spectabalis" and "Osmundia spectabilis" corrected to:
OSMUNDIA "Osmundea spectabilis" (LSID urn:lsid:marinespecies.org:taxname:372624)
* Data table within submitted file "pHAKFA_FA_conc_pub.csv" was imported into the BCO-DMO data system for this dataset. Values "NA" imported as missing data values. The missing data identifiers were described as NA = not applicable.
** In the BCO-DMO data system missing data identifiers are displayed according to the format of data you access. For example, in csv files it will be blank (null) values. In Matlab .mat files it will be NaN values. When viewing data online at BCO-DMO, the missing value will be shown as blank (null) values.
* Year_Month column added.
* lengthDia_comment column added to hold string notes that were in the lengthDia column ("partial blade").
* Taxnomomic name checking and dataset update: World Register of Marine Species taxa match tool used to find misspellings and match names to identifier "Life Science Identifier" (LSID) on 2024-12-27.
* Changes were made to the genus and species columns in the dataset after a discussion with data submitter. Name spelling matches the currently accepted names for the organisms as of the time of this dataset's publication. A note in the "Data Processing Description" metadata section was added to clarify why the codes may not all look like a representation of the genus and species names in the dataset. And to clarify a re-classification of one of the codes.
* Species list with the species codes, scientific names, LSID, taxon status and match quality were added as a supplemental file.
* Supplemental site list table extracted from provided metadata and added as a supplemental file.
* lengthDia and height columns contained variable units described in additional column lengthHeightUnits as either "mm" or "cm". Columns with consistent units in mm added for lengthDia_mm and height_mm instead.
* lat and lon for SANDYCOVE added to site_list.csv and primary data table from coordinates supplied by the data contributors.
File |
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Fatty acid composition of select marine algae and invertebrates from Sitka Sound, Alaska filename: 947067_v1_phakfa_fa_conc.csv (Comma Separated Values (.csv), 83.79 KB) MD5:e9354590097e364c218c350f39f7f0c8 Primary data file for dataset ID 947067, version 1. |
File |
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Site List filename: site_list.csv (Comma Separated Values (.csv), 212 bytes) MD5:cf851c133fb411fa2479ec5fd86c2bf4 Site list table including columns:site, Site code (corresponds to column "site" in the fatty acid data table.site_name, Site namelat, Site latitude, decimal degreeslon, Site longitude, decimal degrees |
Species List filename: species_list.csv (Comma Separated Values (.csv), 1.18 KB) MD5:2a4810f7b1ab888aa89a7eb8f83dcece Species List for Fatty acid composition of select marine algae and invertebrates from Sitka Sound, Alaska.Unique list of organism taxonomic names used in this dataset matched to taxonomic identifiers. Includes quality information about the name match. Taxonomic names used in this dataset were matched to names included at the World Register of Marine Speices (WoRMS) on 2024-12-27.Columns in Species List:spCode, Species code used in this dataset's "spCode" column (e.g. AGFIM)type, Organism type (Algae or Invert)genus_species_in_dataset, Name as it appears in this dataset's genus and species columnsLSID, Life Science Identifier (LSID) for the ScientificName_in_DatasetMatch_type, An indication of how closely the dataset ScientificName_in_Dataset matches the name at WoRMS.Taxon_status, An indication of whether the matched names at WoRMS is the currently accepted name for the organism or is an unaccepted synonym. |
Parameter | Description | Units |
sampleID | sample identifier, based on raw file created by the gas chromatographer-mass spectrometer | unitless |
season | season of sampling, either winter or summer | unitless |
site | site of specimen collection (BREAST = Breast Island, HARRIS = Harris Island, SAMSING = Samsing Pinnacle, SANDYCOVE = Sandy Cove) | unitless |
Year_Month | Year and month of sampling | unitless |
lat | site latitude | decimal degrees |
lon | site longitude | decimal degrees |
spCode | species shorthand code for specimen, primarily for recording and coding convenience, based on the genus name or a combination of genus name and species epithet. Note that SACCH is corrected to current name Hedophyllum nigripes in analysis and manuscript. See more information in the supplemental species_list.csv | unitless |
type | guild of the specimen, Invert = intertebrates or herbivores, Algae = algae or producers | unitless |
genus | Genus name of sampled specimen | unitless |
species | Species epithet of sampled specimen | unitless |
LSID | Life Science Identifier (LSID) for the taxonomic name used in the genus + species columns. See more information in the supplemental species_list.csv | unitless |
lengthDia_comment | Comment explaining blanks in the lengthDia column (e.g. partial blade). | unitless |
lengthDia | length or diameter of specimen, relevant size measure dependent on taxon. | millimeters (mm) |
height | height of specimen, relevant size measure dependent on taxon | millimeters (mm) |
wetWeightG | specimen wet weight | grams (g) |
C12_0 | fatty acid quantity of sample determined via GC-MS for 12:0, lauric acid | micrograms (mg) |
C14_0 | fatty acid quantity of sample determined via GC-MS for 14:0, myristic acid | micrograms (mg) |
C14_1nX_1 | fatty acid quantity of sample determined via GC-MS for 14:1, unknown omega double bond location | micrograms (mg) |
C14_1nX_2 | fatty acid quantity of sample determined via GC-MS for 14:1, unknown omega double bond location | micrograms (mg) |
C14_1n5 | fatty acid quantity of sample determined via GC-MS for 14:1 omega-5 | micrograms (mg) |
i15_0 | fatty acid quantity of sample determined via GC-MS for iso 15:0, branched | micrograms (mg) |
a15_0 | fatty acid quantity of sample determined via GC-MS for anteiso 15:0, branched | micrograms (mg) |
C15_0 | fatty acid quantity of sample determined via GC-MS for 15:0 | micrograms (mg) |
i16_0 | fatty acid quantity of sample determined via GC-MS for iso 16:0, branched | micrograms (mg) |
C16_0 | fatty acid quantity of sample determined via GC-MS for 16:0, palmitic acid | micrograms (mg) |
C16_1nX_1 | fatty acid quantity of sample determined via GC-MS for 16:1, unknown omega double bond location | micrograms (mg) |
C16_1nX_2 | fatty acid quantity of sample determined via GC-MS for 16:1, unknown omega double bond location | micrograms (mg) |
C16_1n7 | fatty acid quantity of sample determined via GC-MS for 16:1 omega-7, palmitoleic acid | micrograms (mg) |
C16_1nX_3 | fatty acid quantity of sample determined via GC-MS for 16:1, unknown omega double bond location | micrograms (mg) |
C16_1nX_4 | fatty acid quantity of sample determined via GC-MS for 16:1, unknown omega double bond location | micrograms (mg) |
i17_0 | fatty acid quantity of sample determined via GC-MS for iso 17:0, branched | micrograms (mg) |
a17_0 | fatty acid quantity of sample determined via GC-MS for anteiso 17:0, branched | micrograms (mg) |
C16_2nX_1 | fatty acid quantity of sample determined via GC-MS for 16:2, uknown omega double bond location | micrograms (mg) |
C16_2nX_2 | fatty acid quantity of sample determined via GC-MS for 16:2, uknown omega double bond location | micrograms (mg) |
C17_0 | fatty acid quantity of sample determined via GC-MS for 17:0 | micrograms (mg) |
C16_3n4 | fatty acid quantity of sample determined via GC-MS for 16:3 omega-4 | micrograms (mg) |
C17_1 | fatty acid quantity of sample determined via GC-MS for 17:1, uknown omega double bond location | micrograms (mg) |
C16_4n1 | fatty acid quantity of sample determined via GC-MS for 16:4 omega-1 | micrograms (mg) |
i18_0 | fatty acid quantity of sample determined via GC-MS for iso 18:0, branched | micrograms (mg) |
C18_0 | fatty acid quantity of sample determined via GC-MS for 18:0, stearic acid | micrograms (mg) |
C18_1nX_1 | fatty acid quantity of sample determined via GC-MS for 17:1, uknown omega double bond location | micrograms (mg) |
C18_1n9 | fatty acid quantity of sample determined via GC-MS for 18:1 omega-9, oleic acid | micrograms (mg) |
C18_1n7c | fatty acid quantity of sample determined via GC-MS for 18:1 omega-7, cis, cis vaccenic acid | micrograms (mg) |
C18_1nX_2 | fatty acid quantity of sample determined via GC-MS for 18:1, uknown omega double bond location | micrograms (mg) |
C18_2n6t | fatty acid quantity of sample determined via GC-MS for 18:2 omega-6, trans | micrograms (mg) |
C18_2n6c | fatty acid quantity of sample determined via GC-MS for 18:2 omega-6, cis, linoleic acid | micrograms (mg) |
i19_0 | fatty acid quantity of sample determined via GC-MS for iso 19:0, branched | micrograms (mg) |
C18_2 | fatty acid quantity of sample determined via GC-MS for 18:2, uknown omega double bond location | micrograms (mg) |
C18_3n6 | fatty acid quantity of sample determined via GC-MS for 18:3 omega-6 | micrograms (mg) |
C19_0 | fatty acid quantity of sample determined via GC-MS for 19:0 | micrograms (mg) |
C18_3n3 | fatty acid quantity of sample determined via GC-MS for 18:3 omega-3, alpha-linolenic acid | micrograms (mg) |
C19_1 | fatty acid quantity of sample determined via GC-MS for 19:1, uknown omega double bond location | micrograms (mg) |
C18_4n3 | fatty acid quantity of sample determined via GC-MS for 18:4 omega-3, stearidonic acid | micrograms (mg) |
C20_0 | fatty acid quantity of sample determined via GC-MS for 20:0, arachidic acid | micrograms (mg) |
C20_1nX_1 | fatty acid quantity of sample determined via GC-MS for 20:1, uknown omega double bond location | micrograms (mg) |
C20_1n9 | fatty acid quantity of sample determined via GC-MS for 20:1 omega-9 | micrograms (mg) |
C20_1nX_2 | fatty acid quantity of sample determined via GC-MS for 20:1, uknown omega double bond location | micrograms (mg) |
C20_2nX_1 | fatty acid quantity of sample determined via GC-MS for 20:2, uknown omega double bond location | micrograms (mg) |
C20_1nX_3 | fatty acid quantity of sample determined via GC-MS for 20:1, uknown omega double bond location | micrograms (mg) |
C20_2nX_2 | fatty acid quantity of sample determined via GC-MS for 20:2, uknown omega double bond location | micrograms (mg) |
C20_2nX_3 | fatty acid quantity of sample determined via GC-MS for 20:2, uknown omega double bond location | micrograms (mg) |
C20_2n6 | fatty acid quantity of sample determined via GC-MS for 20:2 omega-6 | micrograms (mg) |
C20_3n6 | fatty acid quantity of sample determined via GC-MS for 20:3 omega-6 | micrograms (mg) |
C20_4n6 | fatty acid quantity of sample determined via GC-MS for 20:4 omega-6, arachidonic acid | micrograms (mg) |
C20_3n3 | fatty acid quantity of sample determined via GC-MS for 20:3 omega-3 | micrograms (mg) |
C20_4n3 | fatty acid quantity of sample determined via GC-MS for 20:4 omega-3 | micrograms (mg) |
C20_5n3 | fatty acid quantity of sample determined via GC-MS for 20:5 omega-3, eicosapentaenoic acid or EPA | micrograms (mg) |
C22_0 | fatty acid quantity of sample determined via GC-MS for 22:0, behenic acid | micrograms (mg) |
C22_1n9c | fatty acid quantity of sample determined via GC-MS for 22:1 omega-9 | micrograms (mg) |
C22_2n6 | fatty acid quantity of sample determined via GC-MS for 22:2 omega-6 | micrograms (mg) |
C22_2nX | fatty acid quantity of sample determined via GC-MS for 22:2, uknown omega double bond location | micrograms (mg) |
C22_4n6 | fatty acid quantity of sample determined via GC-MS for 22:4 omega-6 | micrograms (mg) |
C22_3n6 | fatty acid quantity of sample determined via GC-MS for 22:3 omega-6 | micrograms (mg) |
C22_4n3 | fatty acid quantity of sample determined via GC-MS for 22:4 omega-3 | micrograms (mg) |
C22_5n3 | fatty acid quantity of sample determined via GC-MS for 22:5 omega-3, docosapentaenoic acid or DPA | micrograms (mg) |
C22_6n3 | fatty acid quantity of sample determined via GC-MS for 22:6 omega-3, docosahexaenoic acid or DHA | micrograms (mg) |
C24_1n9 | fatty acid quantity of sample determined via GC-MS for 24:1 omega-9 | micrograms (mg) |
Dataset-specific Instrument Name | Gas chromatograph mass spectrometer (GC-MS, Shimadzu, Model QP2020) |
Generic Instrument Name | Gas Chromatograph Mass Spectrometer |
Dataset-specific Description | Gas chromatograph mass spectrometer (GC-MS, Shimadzu, Model QP2020), fitted with a DB-23 column (30 x 0.25mm x 0.15 µm, Agilent, Santa Clara, CA, USA), using helium as the carrier gas. |
Generic Instrument Description | Instruments separating gases, volatile substances or substances dissolved in a volatile solvent by transporting an inert gas through a column packed with a sorbent to a detector for assay by a mass spectrometer. |
NSF Award Abstract:
High latitude kelp forests support a wealth of ecologically and economically important species, buffer coastlines from high-energy storms, and play a critical role in the marine carbon cycle by sequestering and storing large amounts of carbon. Understanding how energy fluxes and consumer-resource interactions vary in these kelp communities is critical for defining robust management strategies that help maintain these valuable ecosystem services. In this integrated research and education program, the project team will investigate how consumer populations respond to variability in temperature, carbonate chemistry and resource quality to influence the food webs and ecosystem stability of kelp forests. A comprehensive suite of studies conducted at the northern range limit for giant kelp (Macrocystis pyrifera) in SE Alaska will examine how kelp communities respond to variable environmental conditions arising from seasonal variability and changing ocean temperature and acidification conditions. As part of this project, undergraduate and high school students will receive comprehensive training through (1) an immersive field-based class in Sitka Sound, Alaska, (2) intensive, mentored research internships, and (3) experiential training in science communication and public outreach that will include a variety of opportunities to disseminate research findings through podcasts, public lectures and radio broadcasts.
Consumer-resource interactions structure food webs and govern ecosystem stability, yet our understanding of how these important interactions may change under future climatic conditions is hampered by the complexity of direct and indirect effects of multiple stressors within and between trophic levels. For example, environmentally mediated changes in nutritional quality and chemical deterrence of primary producers have the potential to alter herbivory rates and energy fluxes between primary producers and consumers, with implications for ecosystem stability. Moreover, the effects of global change on primary producers are likely to depend on other limiting resources, such as light and nutrients, which vary seasonally in dynamic, temperate and high latitude ecosystems. In marine ecosystems at high latitude, climate models predict that ocean acidification will be most pronounced during the winter months, when primary production is limited by light. This project is built around the hypothesis that there could be a mismatch in the energetic demands of primary consumers caused by warming and ocean acidification and resource availability and quality during winter months, with cascading effects on trophic structure and ecosystem stability in the future. Through complementary lab and field experiments, the project team will determine 1) how temperature and carbonate chemistry combine to affect primary consumer bioenergetics across a diversity of species and 2) the indirect effects of ocean acidification and warming on primary consumers via environmentally mediated changes in the availability, nutritional quality and palatability of primary producers across seasons. Using the data from the laboratory and field experiments, the project team will 3) construct a model of the emergent effects of warming and ocean acidification on trophic structure and ecosystem stability in seasonally dynamic, high latitude environments.
This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.
Funding Source | Award |
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NSF Division of Ocean Sciences (NSF OCE) |