Bio-optical measurements made using the shipboard flow-through system within three hours of CTD casts conducted on R/V Robert Gordon Sproul cruises along the Southern California coast during July and August 2023

Website: https://www.bco-dmo.org/dataset/953193
Data Type: Cruise Results, experimental
Version: 1
Version Date: 2025-02-18

Project
» Postdoctoral Fellowship: OCE-PRF: Smoke on the water: the impacts of wildfire ash deposition on surface ocean biology (Smoke on the water)
ContributorsAffiliationRole
Baetge, NicholasOregon State University (OSU)Principal Investigator
Graff, JasonOregon State University (OSU)Scientist
Milligan, Allen J.Oregon State University (OSU)Scientist
Hansen, ParkerOregon State University (OSU)Student
Ver Wey, BrianOregon State University (OSU)Student
Rauch, ShannonWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
These data include bio-optical measurements made using the shipboard flow-through system within three hours of CTD casts conducted on the R/V Robert Gordon Sproul (SP2319, SP2320) between dates 2023-07-28 and 2023-08-19 along the Southern California coast. These data were collected to provide context for the incubation experiments that were also conducted on board. Incubations were comprised of dilution experiments to assess phytoplankton growth and microzooplankton grazing rates and dissolved organic carbon (DOC) remineralization bioassays to assess bacterioplankton growth and DOC degradation. Deposition of wildfire ash on the ocean can fertilize microbial production but also has the potential to inhibit microbial growth due to heavy metal toxicity. The data collected from these field experiments can contribute to elevating understanding of wildfire-driven material transfer from the terrestrial system to the ocean and its impact on carbon and energy flow in marine food webs. These data were collected by Dr. Nicholas Baetge, Dr. Jason Graff, Dr. Allen Milligan, Brian Ver Wey, and Parker Hansen of Oregon State University. Data were also collected by Dr. Craig Carlson, Elisa Halewood, and Keri Opalk of the University of California Santa Barbara.


Coverage

Location: Southern California coast
Spatial Extent: N:35.21268 E:-118.402 S:33.54503 W:-122.2133
Temporal Extent: 2023-08-02 - 2023-08-19

Methods & Sampling

Bio-optical measurements of surface seawater were made using the shipboard flow-through system within three hours of a CTD cast. Measurements of particulate attenuation (cp) and particulate absorption (ap) at three wavelengths (λ = 470, 532, and 660 nanometers (nm)) were made with an AC-S spectrophotometer (serial number 94; Sea-Bird Scientific [WET Labs, Inc.]). Coincident measurements of particulate backscattering (bbp) at three wavelengths (λ = 470, 532, and 660 nm) were made with an ECO-BB3 (serial number 349; Sea-Bird Scientific [WET Labs, Inc.]) set in a custom enclosure (Dall’Olmo et al., 2009).


Data Processing Description

Bio-optical data were processed using InLineAnalysis available from the Maine In-situ Sound & Color Lab (https://github.com/OceanOptics/InLineAnalysis; Boss et al, 2019).


BCO-DMO Processing Description

- Imported original file "BIO-OPTICS.csv" into the BCO-DMO system.
- Flagged "NA" as a missing data value; missing data are empty/blank in the final CSV file.
- PI applied rounding to numeric values and provided a new file.
- Saved final data file as "953193_v1_bio-optical_measurements.csv".


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Data Files

File
953193_v1_bio-optical_measurements.csv
(Comma Separated Values (.csv), 1.33 MB)
MD5:626d74d52645a577f91ba3595287c4ec
Primary data file for dataset ID 953193, version 1

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Related Publications

Baetge, N., Behrenfeld, M. J., Fox, J., Halsey, K. H., Mojica, K. D. A., Novoa, A., Stephens, B. M., & Carlson, C. A. (2021). The Seasonal Flux and Fate of Dissolved Organic Carbon Through Bacterioplankton in the Western North Atlantic. Frontiers in Microbiology, 12. https://doi.org/10.3389/fmicb.2021.669883
Methods
Baetge, N., Halsey, K.H., Hanan, E.J., Behrenfeld, M.J., Milligan, A.J., Graff, J.R., Hansen, P., Carlson, C.A., Boiteau, R.B., Arrington, E.A., Comstock, J., Halewood, E.R., Harvey, E.L., Nelson, N.B., Opalk, K., Very Wey, B. (in review). Pre-existing in situ conditions shape coastal plankton response to fire-generated ash leachate. Limnology and Oceanography
Results
Boss, E., Haëntjens, N., Ackleson, S., Balch, B., Chase, A., Dall’Olmo, G., ... & Westberry, T. (2019). Inherent Optical Property Measurements and Protocols: Best practices for the collection and processing of ship-based underway flow-through optical data. Ioccg Ocean Optics and Biogeochemistry Protocols for Satellite Ocean Colour Sensor Validation; IOCCG: Dartmouth, NS, Canada. doi: 10.25607/OBP-664
Methods
Boss, E., Picheral, M., Leeuw, T., Chase, A., Karsenti, E., Gorsky, G., Taylor, L., Slade, W., Ras, J., & Claustre, H. (2013). The characteristics of particulate absorption, scattering and attenuation coefficients in the surface ocean; Contribution of the Tara Oceans expedition. Methods in Oceanography, 7, 52–62. https://doi.org/10.1016/j.mio.2013.11.002
Methods
Dall’Olmo, G., Westberry, T. K., Behrenfeld, M. J., Boss, E., & Slade, W. H. (2009). Significant contribution of large particles to optical backscattering in the open ocean. Biogeosciences, 6(6), 947–967. https://doi.org/10.5194/bg-6-947-2009
Methods
Flores, J. M., Bourdin, G., Kostinski, A. B., Altaratz, O., Dagan, G., Lombard, F., Haëntjens, N., Boss, E., Sullivan, M. B., Gorsky, G., Lang-Yona, N., Trainic, M., Romac, S., Voolstra, C. R., Rudich, Y., Vardi, A., & Koren, I. (2021). Diel cycle of sea spray aerosol concentration. Nature Communications, 12(1). https://doi.org/10.1038/s41467-021-25579-3
Methods
Gardner, W. D., Gundersen, J. S., Richardson, M. J., & Walsh, I. D. (1999). The role of seasonal and diel changes in mixed-layer depth on carbon and chlorophyll distributions in the Arabian Sea. Deep Sea Research Part II: Topical Studies in Oceanography, 46(8–9), 1833–1858. https://doi.org/10.1016/s0967-0645(99)00046-6 https://doi.org/10.1016/S0967-0645(99)00046-6
Methods
Gasol, J. M., & Morán, X. A. G. (2015). Flow Cytometric Determination of Microbial Abundances and Its Use to Obtain Indices of Community Structure and Relative Activity. Hydrocarbon and Lipid Microbiology Protocols, 159–187. https://doi.org/10.1007/8623_2015_139
Methods
Graff, J. R., Nelson, N. B., Roca-Martí, M., Romanelli, E., Kramer, S. J., Erickson, Z., Cetinić, I., Buesseler, K. O., Passow, U., Zhang, X., Benitez-Nelson, C., Bisson, K., Close, H. G., Crockford, T., Fox, J., Halewood, S., Lam, P., Roesler, C., Sweet, J., … Siegel, D. A. (2023). Reconciliation of total particulate organic carbon and nitrogen measurements determined using contrasting methods in the North Pacific Ocean as part of the NASA EXPORTS field campaign. Elem Sci Anth, 11(1). https://doi.org/10.1525/elementa.2022.00112
Methods
Halewood, E., Opalk, K., Custals, L., Carey, M., Hansell, D., & Carlson, C. A. (2022). GO-SHIP Repeat Hydrography: Determination of dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) in seawater using High Temperature Combustion Analysis.[GOOS ENDORSED PRACTICE]. UNESCO/IOC. https://doi.org/10.25607/OBP-1745
Methods
Hansell, D. A. (2005). Dissolved Organic Carbon Reference Material Program. Eos, Transactions American Geophysical Union, 86(35), 318. doi:10.1029/2005eo350003
Methods
Landry, M. R., & Hassett, R. P. (1982). Estimating the grazing impact of marine micro-zooplankton. Marine Biology, 67(3), 283–288. doi:10.1007/bf00397668 https://doi.org/10.1007/BF00397668
Methods
Morison, F., Harvey, E., Franzè, G., & Menden-Deuer, S. (2019). Storm-Induced Predator-Prey Decoupling Promotes Springtime Accumulation of North Atlantic Phytoplankton. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00608
Methods

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Parameters

ParameterDescriptionUnits
stn

station number

unitless
lat

latitude

degrees North
lon

longitude

degrees East
dt

datetime (UTC) in ISO 8601 format

unitless
bbp_470

particulate backscattering at 470 nm

reciprocal meters (1/m)
bbp_532

particulate backscattering at 532 nm

reciprocal meters (1/m)
bbp_660

particulate backscattering at 660 nm

reciprocal meters (1/m)
ap_470

particulate absorption at 470 nm

reciprocal meters (1/m)
ap_532

particulate absorption at 532 nm

reciprocal meters (1/m)
ap_660

particulate absorption at 660 nm

reciprocal meters (1/m)
cp_470

particulate attenuation at 470 nm

reciprocal meters (1/m)
cp_532

particulate attenuation at 532 nm

reciprocal meters (1/m)
cp_660

particulate attenuation at 660 nm

reciprocal meters (1/m)
poc_cp_660

Particulate organic carbon concentration estimated from particulate attenuation at 660 nm

milligrams per cubic meter (mg/m3)
chl_ap676lh

Chlorophyll concentration estimated from the line height of particulate absorption at 676 nm

milligrams per cubic meter (mg/m3)
gamma_cp

The mean particle size index

unitless


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Instruments

Dataset-specific Instrument Name
AC-S spectrophotometer
Generic Instrument Name
WET Labs AC-S in-situ spectrophotometer
Dataset-specific Description
Measurements of particulate attenuation (cp) and particulate absorption (ap) at three wavelengths (λ = 470, 532, and 660 nm) were made with an AC-S spectrophotometer (serial number 94; Sea-Bird Scientific [WET Labs, Inc.]).
Generic Instrument Description
The WET Labs {Sea-Bird WETLabs} AC-S in-situ spectrophotometer is based on the AC-9 flow-through sensor offering increased spectral resolution of in-situ absorption and beam attenuation. The AC-S can have 80 (+/- 5) wavelength outputs with a range of 400-730 nm. The AC-S consists of a 10 or 25-centimeter (cm) pathlength, a 4-nanometer (nm) resolution, an accuracy of 0.001 - 10 m-1, an operational temperature range of 0 - 30 degrees Celsius, and an operational depth rating of 500 meters.

Dataset-specific Instrument Name
ECO-BB3
Generic Instrument Name
WET Labs ECO BB3SLO scattering sensor
Dataset-specific Description
Coincident measurements of particulate backscattering (bbp) at three wavelengths (λ = 470, 532, and 660 nm) were made with an ECO-BB3 (serial number 349; Sea-Bird Scientific [WET Labs, Inc.]) set in a custom enclosure (Dall’Olmo et al., 2009).
Generic Instrument Description
The WET Labs {Sea-Bird WETLabs} ECO Puck Triplet BB3SLO scattering sensor is a variant of the ECO Puck Triplet. The BB3 is a three-optical-sensor, user-defined instrument that carries 3 scattering meters. ECO Pucks are real‐time only sensors as they are integrated onto the OEM platform that provides power and data handling. The SLO designation signifies this is a 1st generation model that is specific for integration into Slocum gliders. The fluorometers and scattering meter are single wavelength sensors. The model is depth-rated to 600 meters.


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Deployments

SP2320

Website
Platform
R/V Robert Gordon Sproul
Start Date
2023-08-14
End Date
2023-08-19
Description
See more information at R2R: https://www.rvdata.us/search/cruise/SP2320

SP2319

Website
Platform
R/V Robert Gordon Sproul
Start Date
2023-07-28
End Date
2023-08-10
Description
See more information at R2R: https://www.rvdata.us/search/cruise/SP2319


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Project Information

Postdoctoral Fellowship: OCE-PRF: Smoke on the water: the impacts of wildfire ash deposition on surface ocean biology (Smoke on the water)

Coverage: Pacific Ocean


NSF Award Abstract:
Climate-driven warming is projected to increase the frequency, intensity, and size of wildfires that can have severe environmental, human, and economic impacts, particularly along the U.S. West Coast. These wildfires result in dramatic CO2 emissions and deposition of ash carrying nutrients, organic matter, and trace metals onto the coastal and open ocean. Deposition of wildfire ash on the ocean can alter the carbon and energy flow through marine food webs by fertilizing microbial production or inhibiting microbial growth due to heavy metal toxicity. How the character of both the ash (e.g., chemical quality, fertilizing v. toxic) and the starting microbial community composition (e.g., diversity, size distribution) influences the microbial response to ash-derived material is unknown. This project will address this knowledge gap by investigating the physiological responses of marine plankton off the U.S West Coast to different types of ash generated from local wildfires and plant biomass. This work will advance interdisciplinary science, bridging biological oceanography with terrestrial ecology and biogeochemistry, by generating foundational knowledge of wildfire impacts on surface ocean biology and carbon and energy transfer from land to ocean. Results from this project will enable improved forecasts of changes in marine ecosystems in response to wildfires, which is information pertinent to communities and industries that depend on ocean ecosystem resources, including fisheries. The work will also inform national efforts to mitigate and adapt to the impacts of climate change by addressing whether wildfire-stimulated fertilization and carbon fixation in the ocean can offset CO2 emissions from wildfires. This project will broaden participation and education in ocean science by providing immersive research experiences for multiple undergraduate students and opportunities for them to disseminate their work through scientific conferences and publications. Additionally, a day-long content unit related to the project will be developed and implemented in Oregon State University’s annual week-long Microbiology Summer Camp, which provides local high school students with a hands-on learning experience in microbiology.

Specifically, this project consists of mechanistic studies designed to quantitatively describe the physiological responses (e.g., growth, productivity, cellular stoichiometry) of phytoplankton and bacterioplankton to a variety of ash types. The quantity and proportion of nutrients, organic matter, and trace metals leached from ash into seawater likely depends on the quality of the ash, which is influenced by vegetation type and the temperature at which the ash was produced. This study will assess how microbial production and growth are fertilized or inhibited by the composition of ash and will consist of two primary elements. In the first element, ash will be collected from the field and generated in the lab from plant biomass. The ash will then be leached in seawater and chemically characterized for inorganic and organic matter content. In the second element, seawater incubation experiments will be conducted to quantify physiological and diversity-based responses of naturally occurring phytoplankton and bacterial communities to different ash types. Data generated from this project will contribute to improved predictive models of wildfire-driven material transfer from the terrestrial system to the ocean and its impact on carbon and energy flow in marine food webs.

This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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