Phytoplankton pigment concentrations for samples collected from the upper 200 meters during the GP17-OCE cruise on R/V Roger Revelle (RR2214) in the South Pacific and Southern Oceans from December 2022 to January 2023

Website: https://www.bco-dmo.org/dataset/955866
Data Type: Cruise Results
Version: 1
Version Date: 2025-03-11

Project
» US GEOTRACES GP17 Section: South Pacific and Southern Ocean (GP17-OCE) (GP17-OCE)

Program
» U.S. GEOTRACES (U.S. GEOTRACES)
ContributorsAffiliationRole
Twining, BenjaminBigelow Laboratory for Ocean SciencesPrincipal Investigator
Rauch, ShannonWoods Hole Oceanographic Institution (WHOI BCO-DMO)BCO-DMO Data Manager

Abstract
This dataset contains phytoplankton pigment concentrations for samples collected from the upper 200 meters at most stations along the GP17-OCE cruise on R/V Roger Revelle (RR2214), from Tahiti south across the Antarctic Circumpolar Current to 67S, then east towards Chile. Samples were collected at the upper-most 4-6 stations, and from surface waters with a towed fish. The expedition took place from December 2022 to January 2023.


Coverage

Spatial Extent: N:-19.815465 E:-75.09732 S:-67.004865 W:-152.00026
Temporal Extent: 2022-12-03 - 2023-01-24

Methods & Sampling

Pigments were collected using a conventional rosette, and sampled from the shallowest 4-6 depths on casts. Typically the surface sample was also taken via an underway towfish. Pigments were collected into 2-liter (L) amber bottles, triple rinsed with sample prior to filling. They were immediately filtered under vacuum through 25-millimeter (mm) GF/F filters. They were folded and placed inside aluminum foil packets, labeled with appropriate GEOTRACES numbers, and frozen at -80 degrees Celsius (°C).

Samples were analyzed at Oregon State University’s Ocean Ecology and Biogeochemistry Facilities (https://ceoas.oregonstate.edu/ocean-ecology-and-biogeochemistry-facilities). Their method for pigment analysis is based on the protocol described by Mantoura and Lewellyn (1983) and modified according to Bidigare et al. (1989). Briefly, samples are extracted for up to 48 hours in 100% acetone at -20°C, then analyzed on a Waters 2690 separations module equipped with a C18 column and full spectrum photodiode array detector. Pigment standards for calibration and response factor calculations are obtained from DHI Group in Denmark. An SOP is attached (HOT-Bidigare-HPLC_SOP.docx).


Data Processing Description

Canthaxanthin pigment is added as an internal standard (IS) to each autosample vial, and replicate canthaxanthin standards are analyzed as samples at the beginning and end of each run. Use of canthaxanthin (which is not present in oceanic phytoplankton) as an IS accounts for minute differences in dilution of pigment within each sample extract. These differences can include small amounts of seawater left on the filter at the time of sampling in the field, and evaporative differences between vials during extraction.


BCO-DMO Processing Description

- Imported original file "RR2214_dataTemplate_Pigments_V3.xlsx" into the BCO-DMO system.
- Renamed fields to comply with BCO-DMO naming conventions.
- Created date and time fields in ISO 8601 format.
- Saved the final file as "955866_v1_gp17-oce_phytoplankton_pigments.csv".
- Converted the intercalibration and SOP docs to PDF.


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Related Publications

Bidigare, R. R., Schofield, O., & Prézelin, B. B. (1989). Influence of zeaxanthin on quantum yield of photosynthesis of Synechococcus clone WH7803 (DC2). Marine Ecology Progress Series, 56(1/2), 177–188. http://www.jstor.org/stable/24835757 https://www.jstor.org/stable/24835757
Methods
Mantoura, R. F. C., & Llewellyn, C. A. (1983). The rapid determination of algal chlorophyll and carotenoid pigments and their breakdown products in natural waters by reverse-phase high-performance liquid chromatography. Analytica Chimica Acta, 151, 297–314. https://doi.org/10.1016/s0003-2670(00)80092-6 https://doi.org/10.1016/S0003-2670(00)80092-6
Methods

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Parameters

ParameterDescriptionUnits
Station_ID

Station number

unitless
Event_ID

Event number

unitless
Gear_ID

Sampling instrument: ODF (ODF rosette); FISH (towed fish); or Ship's Underway.

unitless
Start_ISO_DateTime_UTC

Date and time (UTC) at start of event in ISO 8601 format

unitless
Start_Date_UTC

Date at start of event (UTC)

unitless
Start_Time_UTC

Time at start of event (UTC)

unitless
End_ISO_DateTime_UTC

Date and time (UTC) at end of event in ISO 8601 format

unitless
End_Date_UTC

Date at end of event (UTC)

unitless
End_Time_UTC

Time at end of event (UTC)

unitless
Start_Latitude

Latitude at start of event; negative values = South

decimal degrees
Start_Longitude

Longitude at start of event; negative values = South

decimal degrees
End_Latitude

Latitude at end of event; negative values = West

decimal degrees
End_Longitude

Longitude at end of event; negative values = West

decimal degrees
Rosette_Position

Rosette position (empty; column not used)

unitless
Sample_ID

GEOTRACES sample ID number

unitless
Sample_Depth

Sample depth

meters (m)
Chl_b_HPLC_TP_CONC_BOTTLE_jpcktv

Concentration of Chlorophyll b measured using HPLC method

nanograms per liter (ng/L)
SD1_Chl_b_HPLC_TP_CONC_BOTTLE_jpcktv

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Chl_b_HPLC_TP_CONC_BOTTLE_jpcktv

Quality flag (not reported)

unitless
Alpha_Car_HPLC_TP_CONC_BOTTLE_a9ppew

Concentration of alpha-Carotene measured using HPLC method

nanograms per liter (ng/L)
SD1_Alpha_Car_HPLC_TP_CONC_BOTTLE_a9ppew

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Alpha_Car_HPLC_TP_CONC_BOTTLE_a9ppew

Quality flag (not reported)

unitless
Perid_HPLC_TP_CONC_BOTTLE_rwxkre

Concentration of Peridinin measured using HPLC method

nanograms per liter (ng/L)
SD1_Perid_HPLC_TP_CONC_BOTTLE_rwxkre

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Perid_HPLC_TP_CONC_BOTTLE_rwxkre

Quality flag (not reported)

unitless
Pras_HPLC_TP_CONC_BOTTLE_xgast9

Concentration of Prasinoxanthin measured using HPLC method

nanograms per liter (ng/L)
SD1_Pras_HPLC_TP_CONC_BOTTLE_xgast9

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Pras_HPLC_TP_CONC_BOTTLE_xgast9

Quality flag (not reported)

unitless
Chl_c3_HPLC_TP_CONC_BOTTLE_3pden4

Concentration of Chlorophyll c3 measured using HPLC method

nanograms per liter (ng/L)
SD1_Chl_c3_HPLC_TP_CONC_BOTTLE_3pden4

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Chl_c3_HPLC_TP_CONC_BOTTLE_3pden4

Quality flag (not reported)

unitless
Chl_c1_chl_c2_HPLC_TP_CONC_BOTTLE_u9c291

Concentration of chlorophyll c1 + chlorophyll c2 measured using HPLC method

nanograms per liter (ng/L)
SD1_Chl_c1_chl_c2_HPLC_TP_CONC_BOTTLE_u9c291

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Chl_c1_chl_c2_HPLC_TP_CONC_BOTTLE_u9c291

Quality flag (not reported)

unitless
Fuco_HPLC_TP_CONC_BOTTLE_e08g9l

Concentration of Fucoxanthin measured using HPLC method

nanograms per liter (ng/L)
SD1_Fuco_HPLC_TP_CONC_BOTTLE_e08g9l

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Fuco_HPLC_TP_CONC_BOTTLE_e08g9l

Quality flag (not reported)

unitless
Allo_HPLC_TP_CONC_BOTTLE_i8aczy

Concentration of Alloxanthin measured using HPLC method

nanograms per liter (ng/L)
SD1_Allo_HPLC_TP_CONC_BOTTLE_i8aczy

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Allo_HPLC_TP_CONC_BOTTLE_i8aczy

Quality flag (not reported)

unitless
Beta_Car_HPLC_TP_CONC_BOTTLE_wfreoc

Concentration of beta-Carotene measured using HPLC method

nanograms per liter (ng/L)
SD1_Beta_Car_HPLC_TP_CONC_BOTTLE_wfreoc

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Beta_Car_HPLC_TP_CONC_BOTTLE_wfreoc

Quality flag (not reported)

unitless
Diato_HPLC_TP_CONC_BOTTLE_rwh6p0

Concentration of Diatoxanthin measured using HPLC method

nanograms per liter (ng/L)
SD1_Diato_HPLC_TP_CONC_BOTTLE_rwh6p0

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Diato_HPLC_TP_CONC_BOTTLE_rwh6p0

Quality flag (not reported)

unitless
Diadino_HPLC_TP_CONC_BOTTLE_zttxw8

Concentration of Diadinoxanthin measured using HPLC method

nanograms per liter (ng/L)
SD1_Diadino_HPLC_TP_CONC_BOTTLE_zttxw8

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Diadino_HPLC_TP_CONC_BOTTLE_zttxw8

Quality flag (not reported)

unitless
Zea_HPLC_TP_CONC_BOTTLE_ueojhe

Concentration of Zeaxanthin measured using HPLC method

nanograms per liter (ng/L)
SD1_Zea_HPLC_TP_CONC_BOTTLE_ueojhe

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Zea_HPLC_TP_CONC_BOTTLE_ueojhe

Quality flag (not reported)

unitless
Hex_fuco_HPLC_TP_CONC_BOTTLE_qk5kd5

Concentration of 19' hexanoyloxyfucoxanthin measured using HPLC method

nanograms per liter (ng/L)
SD1_Hex_fuco_HPLC_TP_CONC_BOTTLE_qk5kd5

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Hex_fuco_HPLC_TP_CONC_BOTTLE_qk5kd5

Quality flag (not reported)

unitless
Neo_HPLC_TP_CONC_BOTTLE_c2fmim

Concentration of Neoxanthin measured using HPLC method

nanograms per liter (ng/L)
SD1_Neo_HPLC_TP_CONC_BOTTLE_c2fmim

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Neo_HPLC_TP_CONC_BOTTLE_c2fmim

Quality flag (not reported)

unitless
Lut_HPLC_TP_CONC_BOTTLE_k584qz

Concentration of lutein measured using HPLC method

nanograms per liter (ng/L)
SD1_Lut_HPLC_TP_CONC_BOTTLE_k584qz

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Lut_HPLC_TP_CONC_BOTTLE_k584qz

Quality flag (not reported)

unitless
But_fuco_HPLC_TP_CONC_BOTTLE_lwpnka

Concentration of 19' Butanoyloxyfucoxanthin measured using HPLC method

nanograms per liter (ng/L)
SD1_But_fuco_HPLC_TP_CONC_BOTTLE_lwpnka

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_But_fuco_HPLC_TP_CONC_BOTTLE_lwpnka

Quality flag (not reported)

unitless
Chlide_a_HPLC_TP_CONC_BOTTLE_cniah1

Quality flag (not reported)

nanograms per liter (ng/L)
SD1_Chlide_a_HPLC_TP_CONC_BOTTLE_cniah1

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Chlide_a_HPLC_TP_CONC_BOTTLE_cniah1

Quality flag (not reported)

unitless
Viola_HPLC_TP_CONC_BOTTLE_txzvkq

Concentration of Violaxanthin measured using HPLC method

nanograms per liter (ng/L)
SD1_Viola_HPLC_TP_CONC_BOTTLE_txzvkq

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Viola_HPLC_TP_CONC_BOTTLE_txzvkq

Quality flag (not reported)

unitless
Chl_a_HPLC_TP_CONC_BOTTLE_4dv6tw

Concentration of Chlorophyll a measured using HPLC method

nanograms per liter (ng/L)
SD1_Chl_a_HPLC_TP_CONC_BOTTLE_4dv6tw

Standard deviation (not reported)

nanograms per liter (ng/L)
Flag_Chl_a_HPLC_TP_CONC_BOTTLE_4dv6tw

Quality flag (not reported)

unitless
Volume_Filtered

Volume filtered

liters (L)


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Instruments

Dataset-specific Instrument Name
ODF CTD Rosette
Generic Instrument Name
CTD Sea-Bird SBE 911plus
Generic Instrument Description
The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics

Dataset-specific Instrument Name
Waters Alliance 2690 HPLC Separations Module
Generic Instrument Name
High-Performance Liquid Chromatograph
Dataset-specific Description
Waters 2690 separations module equipped with a C18 column and full spectrum photodiode array detector
Generic Instrument Description
A High-performance liquid chromatograph (HPLC) is a type of liquid chromatography used to separate compounds that are dissolved in solution. HPLC instruments consist of a reservoir of the mobile phase, a pump, an injector, a separation column, and a detector. Compounds are separated by high pressure pumping of the sample mixture onto a column packed with microspheres coated with the stationary phase. The different components in the mixture pass through the column at different rates due to differences in their partitioning behavior between the mobile liquid phase and the stationary phase.

Dataset-specific Instrument Name
towed fish
Generic Instrument Name
towed unmanned submersible
Generic Instrument Description
A vehicle towed by rigid cable through the water column at fixed or varying depth with no propulsion and no human operator (e.g. Towfish, Scanfish, UOR, SeaSoar).


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Deployments

RR2214

Website
Platform
R/V Roger Revelle
Report
Start Date
2022-12-01
End Date
2023-01-25
Description
The U.S. GEOTRACES GP17-OCE expedition departed Papeete, Tahiti (French Polynesia) on December 1st, 2022 and arrived in Punta Arenas, Chile on January 25th, 2023. The cruise took place in the South Pacific and Southern Oceans aboard the R/V Roger Revelle with a team of 34 scientists led by Ben Twining (Chief Scientist), Jessica Fitzsimmons, and Greg Cutter (Co-Chief Scientists). GP17 was planned as a two-leg expedition, with its first leg (GP17-OCE) as a southward extension of the 2018 GP15 Alaska-Tahiti expedition and a second leg (GP17-ANT; December 2023-January 2024) into coastal and shelf waters of Antarctica's Amundsen Sea. The GP17-OCE section encompassed three major transects: (1) a southbound pseudo-meridional section (~152-135 degrees West) from 20 degrees South to 67 degrees South; (2) an eastbound zonal transect from 135 degrees West to 100 degrees West; (3) and a northbound section returning to Chile (100-75 degrees West). Additional cruise information is available from the following sources: R2R: https://www.rvdata.us/search/cruise/RR2214 CCHDO: https://cchdo.ucsd.edu/cruise/33RR20221201 More information can also be found at: https://usgeotraces.ldeo.columbia.edu/content/gp17-oce


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Project Information

US GEOTRACES GP17 Section: South Pacific and Southern Ocean (GP17-OCE) (GP17-OCE)


Coverage: Papeete, Tahiti to Punta Arenas, Chile


The U.S. GEOTRACES GP17-OCE expedition departed Papeete, Tahiti (French Polynesia) on December 1st, 2022 and arrived in Punta Arenas, Chile on January 25th, 2023. The cruise took place in the South Pacific and Southern Oceans aboard the R/V Roger Revelle (cruise ID RR2214) with a team of 34 scientists lead by Ben Twining (Chief Scientist), Jessica Fitzsimmons and Greg Cutter (Co-Chief Scientists). GP17 was planned as a two-leg expedition, with its first leg (GP17-OCE) as a southward extension of the 2018 GP15 Alaska-Tahiti expedition and a second leg (GP17-ANT; December 2023-January 2024) into coastal and shelf waters of Antarctica's Amundsen Sea.

The South Pacific and Southern Oceans sampled by GP17-OCE play critical roles in global water mass circulation and associated global transfer of heat, carbon, and nutrients. Specific oceanographic regions of interest for GP17-OCE included: the most oligotrophic gyre in the global ocean, the Antarctic Circumpolar Current (ACC) frontal region, the previously unexplored Pacific- Antarctic Ridge, the Pacific Deep Water (PDW) flow along the continental slope of South America, and the continental margin inputs potentially emanating from South America.

Further information is available on the US GEOTRACES website and in the cruise report (PDF).

NSF Project Title: Collaborative Research: Management and Implementation of US GEOTRACES GP17 Section: South Pacific and Southern Ocean (GP17-OCE)

NSF Award Abstract:
This award will support the management and implementation of a research expedition from Tahiti to Chile that will enable sampling for a broad suite of trace elements and isotopes (TEI) across oceanographic regions of importance to global nutrient and carbon cycling as part of the U.S. GEOTRACES program. GEOTRACES is a global effort in the field of Chemical Oceanography, the goal of which is to understand the distributions of trace elements and their isotopes in the ocean. Determining the distributions of these elements and isotopes will increase understanding of processes that shape their distributions, such as ocean currents and material fluxes, and also the processes that depend on these elements, such as the growth of phytoplankton and the support of ocean ecosystems. The proposed cruise will cross the South Pacific Gyre, the Antarctic Circumpolar Current, iron-limited Antarctic waters, and the Chilean margin. In combination with a proposed companion GEOTRACES expedition on a research icebreaker (GP17-ANT) that will be joined by two overlapping stations, the team of investigators will create an ocean section from the ocean's most nutrient-poor waters to its highly-productive Antarctic polar region - a region that plays an outsized role in modulating the global carbon cycle. The expedition will support and provide management infrastructure for additional participating science projects focused on measuring specific external fluxes and internal cycling of TEIs along this section.

The South Pacific Gyre and Pacific sector of the Southern Ocean play critical roles in global water mass circulation and associated global transfer of heat, carbon, and nutrients, but they are chronically understudied for TEIs due to their remote locale. These are regions of strong, dynamic fronts where sub-surface water masses upwell and subduct, and biological and chemical processes in these zones determine nutrient stoichiometries and tracer concentrations in waters exported to lower latitudes. The Pacific sector represents an end member of extremely low external TEI surface fluxes and thus an important region to constrain inputs from the rapidly-changing Antarctic continent. Compared to other ocean basins, TEI cycling in these regions is thought to be dominated by internal cycling processes such as biological uptake, regeneration, and scavenging, and these are poorly represented in global ocean models. The cruise will enable funded investigators to address research questions such as: 1) what are relative rates of external TEI fluxes to this region, including dust, sediment, hydrothermal, and cryospheric fluxes? 2) What are the (micro) nutrient regimes that support productivity, and what impacts do biomass accumulation, export, and regeneration have on TEI cycling and stoichiometries of exported material? 3) What are TEI and nutrient stoichiometries of subducting water masses, and how do scavenging and regeneration impact these during transport northward? This management project has several objectives: 1) plan and coordinate a 55-day research cruise in 2021-2022; 2) use both conventional and trace-metal 'clean' sampling systems to obtain TEI samples, as well as facilitate sampling for atmospheric aerosols and large volume particles and radionuclides; 3) acquire hydrographic data and samples for salinity, dissolved oxygen, algal pigments, and macro-nutrients; and deliver these data to relevant repositories; 4) ensure that proper QA/QC protocols, as well as GEOTRACES intercalibration protocols, are followed and reported; 5) prepare the final cruise report to be posted with data; 6) coordinate between all funded cruise investigators, as well as with leaders of proposed GP17-ANT cruise; and 7) conduct broader impact efforts that will engage the public in oceanographic research using immersive technology. The motivations for and at-sea challenges of this work will be communicated to the general public through creation of immersive 360/Virtual Reality experiences, via a collaboration with the Texas A&M University Visualization LIVE Lab. Through Virtual Reality, users will experience firsthand what life and TEI data collection at sea entail. Virtual reality/digital games and 360° experiences will be distributed through GEOTRACES outreach websites, through PI engagement with local schools, libraries, STEM summer camps, and adult service organizations, and through a collaboration with the National Academy of Sciences.



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Program Information

U.S. GEOTRACES (U.S. GEOTRACES)


Coverage: Global


GEOTRACES is a SCOR sponsored program; and funding for program infrastructure development is provided by the U.S. National Science Foundation.

GEOTRACES gained momentum following a special symposium, S02: Biogeochemical cycling of trace elements and isotopes in the ocean and applications to constrain contemporary marine processes (GEOSECS II), at a 2003 Goldschmidt meeting convened in Japan. The GEOSECS II acronym referred to the Geochemical Ocean Section Studies To determine full water column distributions of selected trace elements and isotopes, including their concentration, chemical speciation, and physical form, along a sufficient number of sections in each ocean basin to establish the principal relationships between these distributions and with more traditional hydrographic parameters;

* To evaluate the sources, sinks, and internal cycling of these species and thereby characterize more completely the physical, chemical and biological processes regulating their distributions, and the sensitivity of these processes to global change; and

* To understand the processes that control the concentrations of geochemical species used for proxies of the past environment, both in the water column and in the substrates that reflect the water column.

GEOTRACES will be global in scope, consisting of ocean sections complemented by regional process studies. Sections and process studies will combine fieldwork, laboratory experiments and modelling. Beyond realizing the scientific objectives identified above, a natural outcome of this work will be to build a community of marine scientists who understand the processes regulating trace element cycles sufficiently well to exploit this knowledge reliably in future interdisciplinary studies.

Expand "Projects" below for information about and data resulting from individual US GEOTRACES research projects.



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Funding

Funding SourceAward
NSF Division of Ocean Sciences (NSF OCE)

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