Contributors | Affiliation | Role |
---|---|---|
Twining, Benjamin | Bigelow Laboratory for Ocean Sciences | Principal Investigator |
Rauch, Shannon | Woods Hole Oceanographic Institution (WHOI BCO-DMO) | BCO-DMO Data Manager |
Pigments were collected using a conventional rosette, and sampled from the shallowest 4-6 depths on casts. Typically the surface sample was also taken via an underway towfish. Pigments were collected into 2-liter (L) amber bottles, triple rinsed with sample prior to filling. They were immediately filtered under vacuum through 25-millimeter (mm) GF/F filters. They were folded and placed inside aluminum foil packets, labeled with appropriate GEOTRACES numbers, and frozen at -80 degrees Celsius (°C).
Samples were analyzed at Oregon State University’s Ocean Ecology and Biogeochemistry Facilities (https://ceoas.oregonstate.edu/ocean-ecology-and-biogeochemistry-facilities). Their method for pigment analysis is based on the protocol described by Mantoura and Lewellyn (1983) and modified according to Bidigare et al. (1989). Briefly, samples are extracted for up to 48 hours in 100% acetone at -20°C, then analyzed on a Waters 2690 separations module equipped with a C18 column and full spectrum photodiode array detector. Pigment standards for calibration and response factor calculations are obtained from DHI Group in Denmark. An SOP is attached (HOT-Bidigare-HPLC_SOP.docx).
Canthaxanthin pigment is added as an internal standard (IS) to each autosample vial, and replicate canthaxanthin standards are analyzed as samples at the beginning and end of each run. Use of canthaxanthin (which is not present in oceanic phytoplankton) as an IS accounts for minute differences in dilution of pigment within each sample extract. These differences can include small amounts of seawater left on the filter at the time of sampling in the field, and evaporative differences between vials during extraction.
- Imported original file "RR2214_dataTemplate_Pigments_V3.xlsx" into the BCO-DMO system.
- Renamed fields to comply with BCO-DMO naming conventions.
- Created date and time fields in ISO 8601 format.
- Saved the final file as "955866_v1_gp17-oce_phytoplankton_pigments.csv".
- Converted the intercalibration and SOP docs to PDF.
Parameter | Description | Units |
Station_ID | Station number | unitless |
Event_ID | Event number | unitless |
Gear_ID | Sampling instrument: ODF (ODF rosette); FISH (towed fish); or Ship's Underway. | unitless |
Start_ISO_DateTime_UTC | Date and time (UTC) at start of event in ISO 8601 format | unitless |
Start_Date_UTC | Date at start of event (UTC) | unitless |
Start_Time_UTC | Time at start of event (UTC) | unitless |
End_ISO_DateTime_UTC | Date and time (UTC) at end of event in ISO 8601 format | unitless |
End_Date_UTC | Date at end of event (UTC) | unitless |
End_Time_UTC | Time at end of event (UTC) | unitless |
Start_Latitude | Latitude at start of event; negative values = South | decimal degrees |
Start_Longitude | Longitude at start of event; negative values = South | decimal degrees |
End_Latitude | Latitude at end of event; negative values = West | decimal degrees |
End_Longitude | Longitude at end of event; negative values = West | decimal degrees |
Rosette_Position | Rosette position (empty; column not used) | unitless |
Sample_ID | GEOTRACES sample ID number | unitless |
Sample_Depth | Sample depth | meters (m) |
Chl_b_HPLC_TP_CONC_BOTTLE_jpcktv | Concentration of Chlorophyll b measured using HPLC method | nanograms per liter (ng/L) |
SD1_Chl_b_HPLC_TP_CONC_BOTTLE_jpcktv | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Chl_b_HPLC_TP_CONC_BOTTLE_jpcktv | Quality flag (not reported) | unitless |
Alpha_Car_HPLC_TP_CONC_BOTTLE_a9ppew | Concentration of alpha-Carotene measured using HPLC method | nanograms per liter (ng/L) |
SD1_Alpha_Car_HPLC_TP_CONC_BOTTLE_a9ppew | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Alpha_Car_HPLC_TP_CONC_BOTTLE_a9ppew | Quality flag (not reported) | unitless |
Perid_HPLC_TP_CONC_BOTTLE_rwxkre | Concentration of Peridinin measured using HPLC method | nanograms per liter (ng/L) |
SD1_Perid_HPLC_TP_CONC_BOTTLE_rwxkre | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Perid_HPLC_TP_CONC_BOTTLE_rwxkre | Quality flag (not reported) | unitless |
Pras_HPLC_TP_CONC_BOTTLE_xgast9 | Concentration of Prasinoxanthin measured using HPLC method | nanograms per liter (ng/L) |
SD1_Pras_HPLC_TP_CONC_BOTTLE_xgast9 | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Pras_HPLC_TP_CONC_BOTTLE_xgast9 | Quality flag (not reported) | unitless |
Chl_c3_HPLC_TP_CONC_BOTTLE_3pden4 | Concentration of Chlorophyll c3 measured using HPLC method | nanograms per liter (ng/L) |
SD1_Chl_c3_HPLC_TP_CONC_BOTTLE_3pden4 | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Chl_c3_HPLC_TP_CONC_BOTTLE_3pden4 | Quality flag (not reported) | unitless |
Chl_c1_chl_c2_HPLC_TP_CONC_BOTTLE_u9c291 | Concentration of chlorophyll c1 + chlorophyll c2 measured using HPLC method | nanograms per liter (ng/L) |
SD1_Chl_c1_chl_c2_HPLC_TP_CONC_BOTTLE_u9c291 | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Chl_c1_chl_c2_HPLC_TP_CONC_BOTTLE_u9c291 | Quality flag (not reported) | unitless |
Fuco_HPLC_TP_CONC_BOTTLE_e08g9l | Concentration of Fucoxanthin measured using HPLC method | nanograms per liter (ng/L) |
SD1_Fuco_HPLC_TP_CONC_BOTTLE_e08g9l | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Fuco_HPLC_TP_CONC_BOTTLE_e08g9l | Quality flag (not reported) | unitless |
Allo_HPLC_TP_CONC_BOTTLE_i8aczy | Concentration of Alloxanthin measured using HPLC method | nanograms per liter (ng/L) |
SD1_Allo_HPLC_TP_CONC_BOTTLE_i8aczy | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Allo_HPLC_TP_CONC_BOTTLE_i8aczy | Quality flag (not reported) | unitless |
Beta_Car_HPLC_TP_CONC_BOTTLE_wfreoc | Concentration of beta-Carotene measured using HPLC method | nanograms per liter (ng/L) |
SD1_Beta_Car_HPLC_TP_CONC_BOTTLE_wfreoc | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Beta_Car_HPLC_TP_CONC_BOTTLE_wfreoc | Quality flag (not reported) | unitless |
Diato_HPLC_TP_CONC_BOTTLE_rwh6p0 | Concentration of Diatoxanthin measured using HPLC method | nanograms per liter (ng/L) |
SD1_Diato_HPLC_TP_CONC_BOTTLE_rwh6p0 | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Diato_HPLC_TP_CONC_BOTTLE_rwh6p0 | Quality flag (not reported) | unitless |
Diadino_HPLC_TP_CONC_BOTTLE_zttxw8 | Concentration of Diadinoxanthin measured using HPLC method | nanograms per liter (ng/L) |
SD1_Diadino_HPLC_TP_CONC_BOTTLE_zttxw8 | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Diadino_HPLC_TP_CONC_BOTTLE_zttxw8 | Quality flag (not reported) | unitless |
Zea_HPLC_TP_CONC_BOTTLE_ueojhe | Concentration of Zeaxanthin measured using HPLC method | nanograms per liter (ng/L) |
SD1_Zea_HPLC_TP_CONC_BOTTLE_ueojhe | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Zea_HPLC_TP_CONC_BOTTLE_ueojhe | Quality flag (not reported) | unitless |
Hex_fuco_HPLC_TP_CONC_BOTTLE_qk5kd5 | Concentration of 19' hexanoyloxyfucoxanthin measured using HPLC method | nanograms per liter (ng/L) |
SD1_Hex_fuco_HPLC_TP_CONC_BOTTLE_qk5kd5 | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Hex_fuco_HPLC_TP_CONC_BOTTLE_qk5kd5 | Quality flag (not reported) | unitless |
Neo_HPLC_TP_CONC_BOTTLE_c2fmim | Concentration of Neoxanthin measured using HPLC method | nanograms per liter (ng/L) |
SD1_Neo_HPLC_TP_CONC_BOTTLE_c2fmim | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Neo_HPLC_TP_CONC_BOTTLE_c2fmim | Quality flag (not reported) | unitless |
Lut_HPLC_TP_CONC_BOTTLE_k584qz | Concentration of lutein measured using HPLC method | nanograms per liter (ng/L) |
SD1_Lut_HPLC_TP_CONC_BOTTLE_k584qz | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Lut_HPLC_TP_CONC_BOTTLE_k584qz | Quality flag (not reported) | unitless |
But_fuco_HPLC_TP_CONC_BOTTLE_lwpnka | Concentration of 19' Butanoyloxyfucoxanthin measured using HPLC method | nanograms per liter (ng/L) |
SD1_But_fuco_HPLC_TP_CONC_BOTTLE_lwpnka | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_But_fuco_HPLC_TP_CONC_BOTTLE_lwpnka | Quality flag (not reported) | unitless |
Chlide_a_HPLC_TP_CONC_BOTTLE_cniah1 | Quality flag (not reported) | nanograms per liter (ng/L) |
SD1_Chlide_a_HPLC_TP_CONC_BOTTLE_cniah1 | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Chlide_a_HPLC_TP_CONC_BOTTLE_cniah1 | Quality flag (not reported) | unitless |
Viola_HPLC_TP_CONC_BOTTLE_txzvkq | Concentration of Violaxanthin measured using HPLC method | nanograms per liter (ng/L) |
SD1_Viola_HPLC_TP_CONC_BOTTLE_txzvkq | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Viola_HPLC_TP_CONC_BOTTLE_txzvkq | Quality flag (not reported) | unitless |
Chl_a_HPLC_TP_CONC_BOTTLE_4dv6tw | Concentration of Chlorophyll a measured using HPLC method | nanograms per liter (ng/L) |
SD1_Chl_a_HPLC_TP_CONC_BOTTLE_4dv6tw | Standard deviation (not reported) | nanograms per liter (ng/L) |
Flag_Chl_a_HPLC_TP_CONC_BOTTLE_4dv6tw | Quality flag (not reported) | unitless |
Volume_Filtered | Volume filtered | liters (L) |
Dataset-specific Instrument Name | ODF CTD Rosette |
Generic Instrument Name | CTD Sea-Bird SBE 911plus |
Generic Instrument Description | The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics |
Dataset-specific Instrument Name | Waters Alliance 2690 HPLC Separations Module |
Generic Instrument Name | High-Performance Liquid Chromatograph |
Dataset-specific Description | Waters 2690 separations module equipped with a C18 column and full spectrum photodiode array detector |
Generic Instrument Description | A High-performance liquid chromatograph (HPLC) is a type of liquid chromatography used to separate compounds that are dissolved in solution. HPLC instruments consist of a reservoir of the mobile phase, a pump, an injector, a separation column, and a detector. Compounds are separated by high pressure pumping of the sample mixture onto a column packed with microspheres coated with the stationary phase. The different components in the mixture pass through the column at different rates due to differences in their partitioning behavior between the mobile liquid phase and the stationary phase. |
Dataset-specific Instrument Name | towed fish |
Generic Instrument Name | towed unmanned submersible |
Generic Instrument Description | A vehicle towed by rigid cable through the water column at fixed or varying depth with no propulsion and no human operator (e.g. Towfish, Scanfish, UOR, SeaSoar). |
Website | |
Platform | R/V Roger Revelle |
Report | |
Start Date | 2022-12-01 |
End Date | 2023-01-25 |
Description | The U.S. GEOTRACES GP17-OCE expedition departed Papeete, Tahiti (French Polynesia) on December 1st, 2022 and arrived in Punta Arenas, Chile on January 25th, 2023. The cruise took place in the South Pacific and Southern Oceans aboard the R/V Roger Revelle with a team of 34 scientists led by Ben Twining (Chief Scientist), Jessica Fitzsimmons, and Greg Cutter (Co-Chief Scientists). GP17 was planned as a two-leg expedition, with its first leg (GP17-OCE) as a southward extension of the 2018 GP15 Alaska-Tahiti expedition and a second leg (GP17-ANT; December 2023-January 2024) into coastal and shelf waters of Antarctica's Amundsen Sea.
The GP17-OCE section encompassed three major transects:
(1) a southbound pseudo-meridional section (~152-135 degrees West) from 20 degrees South to 67 degrees South;
(2) an eastbound zonal transect from 135 degrees West to 100 degrees West;
(3) and a northbound section returning to Chile (100-75 degrees West).
Additional cruise information is available from the following sources:
R2R: https://www.rvdata.us/search/cruise/RR2214
CCHDO: https://cchdo.ucsd.edu/cruise/33RR20221201
More information can also be found at: https://usgeotraces.ldeo.columbia.edu/content/gp17-oce |
The U.S. GEOTRACES GP17-OCE expedition departed Papeete, Tahiti (French Polynesia) on December 1st, 2022 and arrived in Punta Arenas, Chile on January 25th, 2023. The cruise took place in the South Pacific and Southern Oceans aboard the R/V Roger Revelle (cruise ID RR2214) with a team of 34 scientists lead by Ben Twining (Chief Scientist), Jessica Fitzsimmons and Greg Cutter (Co-Chief Scientists). GP17 was planned as a two-leg expedition, with its first leg (GP17-OCE) as a southward extension of the 2018 GP15 Alaska-Tahiti expedition and a second leg (GP17-ANT; December 2023-January 2024) into coastal and shelf waters of Antarctica's Amundsen Sea.
The South Pacific and Southern Oceans sampled by GP17-OCE play critical roles in global water mass circulation and associated global transfer of heat, carbon, and nutrients. Specific oceanographic regions of interest for GP17-OCE included: the most oligotrophic gyre in the global ocean, the Antarctic Circumpolar Current (ACC) frontal region, the previously unexplored Pacific- Antarctic Ridge, the Pacific Deep Water (PDW) flow along the continental slope of South America, and the continental margin inputs potentially emanating from South America.
Further information is available on the US GEOTRACES website and in the cruise report (PDF).
NSF Project Title: Collaborative Research: Management and Implementation of US GEOTRACES GP17 Section: South Pacific and Southern Ocean (GP17-OCE)
NSF Award Abstract:
This award will support the management and implementation of a research expedition from Tahiti to Chile that will enable sampling for a broad suite of trace elements and isotopes (TEI) across oceanographic regions of importance to global nutrient and carbon cycling as part of the U.S. GEOTRACES program. GEOTRACES is a global effort in the field of Chemical Oceanography, the goal of which is to understand the distributions of trace elements and their isotopes in the ocean. Determining the distributions of these elements and isotopes will increase understanding of processes that shape their distributions, such as ocean currents and material fluxes, and also the processes that depend on these elements, such as the growth of phytoplankton and the support of ocean ecosystems. The proposed cruise will cross the South Pacific Gyre, the Antarctic Circumpolar Current, iron-limited Antarctic waters, and the Chilean margin. In combination with a proposed companion GEOTRACES expedition on a research icebreaker (GP17-ANT) that will be joined by two overlapping stations, the team of investigators will create an ocean section from the ocean's most nutrient-poor waters to its highly-productive Antarctic polar region - a region that plays an outsized role in modulating the global carbon cycle. The expedition will support and provide management infrastructure for additional participating science projects focused on measuring specific external fluxes and internal cycling of TEIs along this section.
The South Pacific Gyre and Pacific sector of the Southern Ocean play critical roles in global water mass circulation and associated global transfer of heat, carbon, and nutrients, but they are chronically understudied for TEIs due to their remote locale. These are regions of strong, dynamic fronts where sub-surface water masses upwell and subduct, and biological and chemical processes in these zones determine nutrient stoichiometries and tracer concentrations in waters exported to lower latitudes. The Pacific sector represents an end member of extremely low external TEI surface fluxes and thus an important region to constrain inputs from the rapidly-changing Antarctic continent. Compared to other ocean basins, TEI cycling in these regions is thought to be dominated by internal cycling processes such as biological uptake, regeneration, and scavenging, and these are poorly represented in global ocean models. The cruise will enable funded investigators to address research questions such as: 1) what are relative rates of external TEI fluxes to this region, including dust, sediment, hydrothermal, and cryospheric fluxes? 2) What are the (micro) nutrient regimes that support productivity, and what impacts do biomass accumulation, export, and regeneration have on TEI cycling and stoichiometries of exported material? 3) What are TEI and nutrient stoichiometries of subducting water masses, and how do scavenging and regeneration impact these during transport northward? This management project has several objectives: 1) plan and coordinate a 55-day research cruise in 2021-2022; 2) use both conventional and trace-metal 'clean' sampling systems to obtain TEI samples, as well as facilitate sampling for atmospheric aerosols and large volume particles and radionuclides; 3) acquire hydrographic data and samples for salinity, dissolved oxygen, algal pigments, and macro-nutrients; and deliver these data to relevant repositories; 4) ensure that proper QA/QC protocols, as well as GEOTRACES intercalibration protocols, are followed and reported; 5) prepare the final cruise report to be posted with data; 6) coordinate between all funded cruise investigators, as well as with leaders of proposed GP17-ANT cruise; and 7) conduct broader impact efforts that will engage the public in oceanographic research using immersive technology. The motivations for and at-sea challenges of this work will be communicated to the general public through creation of immersive 360/Virtual Reality experiences, via a collaboration with the Texas A&M University Visualization LIVE Lab. Through Virtual Reality, users will experience firsthand what life and TEI data collection at sea entail. Virtual reality/digital games and 360° experiences will be distributed through GEOTRACES outreach websites, through PI engagement with local schools, libraries, STEM summer camps, and adult service organizations, and through a collaboration with the National Academy of Sciences.
GEOTRACES is a SCOR sponsored program; and funding for program infrastructure development is provided by the U.S. National Science Foundation.
GEOTRACES gained momentum following a special symposium, S02: Biogeochemical cycling of trace elements and isotopes in the ocean and applications to constrain contemporary marine processes (GEOSECS II), at a 2003 Goldschmidt meeting convened in Japan. The GEOSECS II acronym referred to the Geochemical Ocean Section Studies To determine full water column distributions of selected trace elements and isotopes, including their concentration, chemical speciation, and physical form, along a sufficient number of sections in each ocean basin to establish the principal relationships between these distributions and with more traditional hydrographic parameters;
* To evaluate the sources, sinks, and internal cycling of these species and thereby characterize more completely the physical, chemical and biological processes regulating their distributions, and the sensitivity of these processes to global change; and
* To understand the processes that control the concentrations of geochemical species used for proxies of the past environment, both in the water column and in the substrates that reflect the water column.
GEOTRACES will be global in scope, consisting of ocean sections complemented by regional process studies. Sections and process studies will combine fieldwork, laboratory experiments and modelling. Beyond realizing the scientific objectives identified above, a natural outcome of this work will be to build a community of marine scientists who understand the processes regulating trace element cycles sufficiently well to exploit this knowledge reliably in future interdisciplinary studies.
Expand "Projects" below for information about and data resulting from individual US GEOTRACES research projects.
Funding Source | Award |
---|---|
NSF Division of Ocean Sciences (NSF OCE) |