Dataset: BioGeoChem
Deployment: KOK0909

BioGeoChem - Experimental and Survey Biogeochemical Data

Principal Investigator:

Mark A. Brzezinski (University of California-Santa Barbara, UCSB)

Co-Principal Investigator:

Tracy A. Villareal (University of Texas at Austin, UT Austin)

Contact:

Mark A. Brzezinski (University of California-Santa Barbara, UCSB)

Technician:

Janice L. Jones (University of California-Santa Barbara, UCSB-LifeSci)

BCO-DMO Data Manager:

Stephen R. Gegg (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

Silica Cycling and the Role of Diatoms in the North Pacific Subtropical Gyre (Silica Cycling)

Current State:

Preliminary and in progress

Version:

01 March 2013

Deployment Synonyms:

HOT-211

Version Date:

2013-03-01

Data URL:

https://www.bco-dmo.org/dataset-deployment/455853/data

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Description

BioGeoChem - Experimental and Survey Biogeochemical Data

BCO-DMO Note 1: The chlorophyll data belong to Tracy Villareal.
Information on his method was not provided.

BCO-DMO Note 2: These data are VERY preliminary.
They will be reviewed after March 30th.
srg/01March2013

Methods & Sampling

Dataset acquisition description

Links to Protocols Documentation:
32Si_HOT_Protocol - ³²Si Sample Processing - HOT Cruises
32Si _Protocol - ³²Si Production Protocol - POOB Cruises
delta_bSi_HOT_Protocol - delta bSi Production Protocol - HOT Cruises
delta_bSi_Protocol - delta bSi Production Protocol - POOB Cruises
dSi_Protocol - Dissolved Si Analysis
HOT_Sample_Collection - HOT Sample Collection
pSi_Protocol - Particulate Si Analysis

Data Processing Description

Dataset Processing Description

BCO-DMO Processing/Edits
- Generated from original file: "POOB_ALLDATA.xlsx" contributed by Janice Jones
Sheets: "POOB08", "POOB2009" and "HOT"

- BCO-DMO compatible parameter header generated
Spaces converted to underscores
Units removed from variable names
Special characters removed/replaced

- Date reformatted to YYYYMMDD
- Time reformatted to HHMM
- "~" converted to "nd"
- blank cells converted to "nd"

More information about this dataset deployment

Funding

Award Number	Funding Source
OCE-0648130	NSF Division of Ocean Sciences

Instruments

CTD Sea-Bird SBE 911plus

Supplied Description:

CTD Sea-Bird SBE 911plus

Instrument Type

Generic Name: CTD Sea-Bird SBE 911plus

Acronym: CTD SBE 911plus

Community Identifier: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0058/

Generic Description:

The Sea-Bird SBE 911 plus is a type of CTD instrument package for continuous measurement of conductivity, temperature and pressure. The SBE 911 plus includes the SBE 9plus Underwater Unit and the SBE 11plus Deck Unit (for real-time readout using conductive wire) for deployment from a vessel. The combination of the SBE 9 plus and SBE 11 plus is called a SBE 911 plus. The SBE 9 plus uses Sea-Bird's standard modular temperature and conductivity sensors (SBE 3 plus and SBE 4). The SBE 9 plus CTD can be configured with up to eight auxiliary sensors to measure other parameters including dissolved oxygen, pH, turbidity, fluorescence, light (PAR), light transmission, etc.). more information from Sea-Bird Electronics

Niskin bottle

Supplied Description:

Instrument Type

Generic Name: Niskin bottle

Community Identifier: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/

Generic Description:

A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc.

Parameters

Supplied Name	Supplied description	Supplied Units	Standard Name
Cruise	cruise during which sample was collected	text	cruise_name
Station	sampling station	dimensionless	sta_id
C	type of sample (for ODV use only - currently set to C)	C	sample_type
Date	local date	YYYYMMDD	date
Time	local time	HHMM	time
Lat	latitude in decimal degrees (South is negative)	decimal degrees	lat
Lon	longitude in decimal degrees (West is negative)	decimal degrees	lon
Bot_Depth	bottom depth in meters	meters	depth_bottom
Event_Number	event number as yyjulhhh using Julian Day and GMT OR HOT event number as per HOT protocol	yyjulhhhh GMT	event
Station_Number	station number	dimensionless	station
Cast	CTD cast number	dimensionless	cast
Cast_Type	cast type (CTD or sediment trap)	dimensionless	cast_type
Target_Depth	target bottle tripping depth in meters	meters	depth_cast
Actual_Depth	actual bottle tripping depth in meters	meters	depth_cast
Rosette_Bottle	rosette bottle number	dimensionless	no_bcodmo_term
Percent_lo	percent light level (PAR sensor)	percentage	PAR
SiOH4	silicic acid concentration in micromoles (also known as dissolved silicon concentration or dSi)	uM	no_bcodmo_term
bSi_0point6um	particulate biogenic silica in >0.6um fraction in nanomoles Si per litre	nmol Si/L	no_bcodmo_term
bSi_10um	particulate biogenic silica in >10um fraction in nanomoles Si per litre	nmol Si/L	no_bcodmo_term
Lsi_0point6um	particulate lithogenic silica in >0.6um fraction in nanomoles Si per litre	nmol Si/L	no_bcodmo_term
Chl_a_0point4um	chlorophyll a in >0.4um fraction in micrograms per litre *** DATA BELONGS TO TRACY VILLAREAL	ug/L	no_bcodmo_term
Chl_a_10um	chlorophyll a in >10um fraction in micrograms per litre *** DATA BELONGS TO TRACY VILLAREAL	ug/L	no_bcodmo_term
Si32_rho	gross silica production rate	umol Si/L/d	no_bcodmo_term
Si32_Vb	specific silica production rate (gross normalized to biogenic silica concentration)	d-1	no_bcodmo_term
delta_bSi_rho	net silica production rate	nmol Si/L/d	no_bcodmo_term
rho_dissolution	gross silica dissolution rate	nmol Si/L/d	no_bcodmo_term
V_dissolution	specific silica dissolution rate (gross normalized to biogenic silica concentration)	d-1	no_bcodmo_term

Database

Contribute Data

Dataset: BioGeoChem
Deployment: KOK0909

Dataset acquisition description

Dataset Processing Description

Database

Contribute Data

Dataset: BioGeoChemDeployment: KOK0909

Dataset acquisition description

Dataset Processing Description

Dataset: BioGeoChem
Deployment: KOK0909