Dataset: Genetic accession numbers and sampling information for metaviromes collected during the R/V Thomas G. Thompson cruise TN-280 along Line P in the northeast Pacific Ocean in May of 2012

This dataset has not been validatedData not availableVersion 1 (2019-03-25)Dataset Type:Cruise Results

Principal Investigator: Gabrielle Rocap (University of Washington)

Co-Principal Investigator: Michael Carlson (University of Washington)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Ecology of diatom viruses: connecting physiology and field dynamics through host transcriptional responses (Diatom Viruses)

Cite Dataset

This dataset contains genetic accession numbers and sampling information for metaviromes collected during the R/V Thomas G. Thompson cruise TN-280 along Line P in the northeast Pacific Ocean in May of 2012. The accessions identified in this dataset are housed at the National Center for Biotechnology Information (NCBI) under BioProject PRJNA437470.

The status of this page will be "Data not available yet" until the genetic accessions are publicly available at NCBI.

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Related Publications

Methods
Bolger, A. M., Lohse, M., & Usadel, B. (2014). Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, 30(15), 2114–2120. doi:10.1093/bioinformatics/btu170
Methods
Brown, C. T., Howe, A., Zhang, Q., Pyrkosz, A. B., & Brom, T. H. (2012). A reference-free algorithm for computational normalization of shotgun sequencing data. arXiv preprint arXiv:1203.4802.
Methods
John, S. G., Mendez, C. B., Deng, L., Poulos, B., Kauffman, A. K. M., Kern, S., … Sullivan, M. B. (2010). A simple and efficient method for concentration of ocean viruses by chemical flocculation. Environmental Microbiology Reports, 3(2), 195–202. doi:10.1111/j.1758-2229.2010.00208.x
Methods
Zerbino, D. R., & Birney, E. (2008). Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18(5), 821–829. doi:10.1101/gr.074492.107

Rocap, G., Carlson, M. (2019) Genetic accession numbers and sampling information for metaviromes collected during the R/V Thomas G. Thompson cruise TN-280 along Line P in the northeast Pacific Ocean in May of 2012. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2019-03-25 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/762912 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation