Dataset: Metadata for targeted genotyping of green crabs in the northeast Pacific
Data Citation:
Tepolt, C., Grason, E., McDonald, P., Akmajian, A., Yamada, S. B., Schooler, S. (2025) Metadata for targeted genotyping of green crabs collected in the northeast Pacific from Aug 2016 to Oct 2022. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2025-01-27 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.949610.1 [access date]
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This dataset is licensed under Creative Commons Attribution 4.0.
If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.
DOI:10.26008/1912/bco-dmo.949610.1
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Spatial Extent: N:49.606306 E:-122.422437 S:43.347281 W:-124.323273
Coastal northeastern Pacific in the range of Carcinus maenas, from California to British Columbia.
Temporal Extent: 2016-08-17 - 2022-10-12
Principal Investigator:
Carolyn Tepolt (Woods Hole Oceanographic Institution, WHOI)
Co-Principal Investigator:
Emily Grason (Sea Grant, WSG)
Patrick McDonald (University of Washington, UW)
Scientist:
Adrianne Akmajian (Makah Tribe)
Shon Schooler (South Slough National Estuarine Research Reserve)
Sylvia Behrens Yamada (Oregon State University, OSU)
BCO-DMO Data Manager:
Audrey Mickle (Woods Hole Oceanographic Institution, WHOI BCO-DMO)
Version:
1
Version Date:
2025-01-27
Restricted:
No
Validated:
Yes
Current State:
Final no updates expected
Metadata for targeted genotyping of green crabs collected in the northeast Pacific from Aug 2016 to Oct 2022
Abstract:
This project explores genetic changes in the invasive European green crab (Carcinus maenas) in the northeast Pacific, using targeted genotyping of SNPs identified in prior high-resolution population genomics in the region. It tracks the early stages of green crab invasion into a new environment, particularly through repeated sampling of multiple size-classes of crabs from the same sites over multiple years. Samples span time and space across the species range in the northeast Pacific, with a focus on the coast of Washington and Oregon. This dataset includes individual collection and accession metadata for 1,662 crabs, for which raw demultiplexed reads are archived at GenBank's SRA under BioProject PRJNA1177418.