Parameter: sequence

Short Description:

sequence

Short Name:

sequence

Official Name:

sequence

Units:

unitless

No Data Value:

Description

A genetic sequence; e.g. the order of nucleotides in DNA or RNA

Datasets associated with this parameter

Dataset Name	Brief Description	Project	PI-Supplied Parameter Name
Accession numbers	Palatability of non-native alga	Genetic Adaptation Marine Inv	sequence_types
AE1913 Peptide Spectral Counts		Nutrient Stress Responses and AUV Clio	peptide_sequence
Amplicon sequence variants (ASVs) and taxonomy of Pseudo-nitzschia spp.		NBPTS, C-AIM, NES LTER	ASV_seq
Deep-sea larvae for microbiome study	Deep-sea larvae for microbiome study	Mariana Back-arc Vents, Metacommunity Dynamics, EPR Functional Diversity	associatedSequences
Diatom amplicon sequencing variants from Narragansett Bay 2008-2014	Diatom amplicon sequencing variants from Narragansett Bay 2008-2014	NES LTER, NBPTS, Phytoplankton Community Responses	ASV
FASTA file of protein identifications (MetZyme 0.2)	FASTA file of protein identifications from KM1128	MetZyme	sequence
Gnathiid blood meal identification results		Gnathiid isopod ecology	BLAST_sequence
Gulf of Alaska copepods: annotated transcriptomes	The dataset includes the annotation files of nine high-quality de novo transcriptomes generated from shotgun assemblies of short-sequence reads.	Diapause preparation, Neocalanus Gulf of Alaska	seq_id, Entry
HRR 18S full-length sequence BLAST results	HRR 18S full-length sequence BLAST results	HRR	Sequence_ID
HRR Metabarcoding	HRR metatranscriptome	HRR	Sequence_ID
Mariana Back-arc Macrofauna 2014	Macrofauna collected on colonization panels at Snail Vent Field on the Mariana Back-arc in 2014	Mariana Back-arc Vents	associatedSequences
Mesocosm microbial analyses results		Seagrass and Oyster Ecosystems	Sequence
Metabarcoding zooplankton at station ALOHA: OTU tables and fasta files	Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU	Plankton Population Genetics	NCBI_query_sequence_id
Neocalanus flemingeri incubation experiment: gene expression		Diapause preparation	seq_id
Nmarina targeted proteome	Nmarina targeted proteome	CliOMZ	Peptide_sequence
OC1703A Sediment nifH amplicon sequences	OC1703A Sediment nifH amplicon sequences	Deep Sediment N Fix	PCR_primers, Sequencing_adapters
OTU and Sequences	OTU and sequences	St. John LTREB, RUI-LTREB	DNA_Sequence
OTU table for 18S rRNA gene tag sequences from DNA and RNA		SPOT	Oct_150m_cDNA, April_150m_DNA, April_5m_DNA, Jan_890m_DNA, Oct_CAT_cDNA, Jan_DCM_cDNA, July_DCM_DNA, July_POLA_DNA, Jan_890m_cDNA, Oct_5m_cDNA, Jan_150m_cDNA, April_890m_DNA, July_CAT_DNA, Oct_890m_DNA, Jan_CAT_DNA, April_POLA_cDNA, Oct_DCM_DNA, July_5m_DNA, Oct_890m_cDNA, Jan_5m_DNA, July_POLA_cDNA, Oct_150m_DNA, April_5m_cDNA, April_890m_cDNA, Jan_POLA_DNA, April_POLA_DNA, July_150m_DNA, July_CAT_cDNA, Jan_5m_cDNA, Oct_POLA_cDNA, April_150m_cDNA, July_5m_cDNA, April_DCM_DNA, Jan_POLA_cDNA, July_150m_cDNA, Oct_CAT_DNA, Jan_CAT_cDNA, July_890m_DNA, Jan_DCM_DNA, April_CAT_cDNA, July_DCM_cDNA, Jan_150m_DNA, July_890m_cDNA, Oct_POLA_DNA, April_DCM_cDNA, April_CAT_DNA, Oct_DCM_cDNA, Oct_5m_DNA
ProteOMZ Peptide Level Spectral Counts	Total spectral counts of peptides from the R/V Falkor cruise 160115 in the Central Pacific for the ProteOMZ expedition in 2016.	ProteOMZ (Proteomics in an Oxygen Minimum Zone)	peptide_sequence
PRS bacteria identification	Culture-independent identification of bacteria present in the pressure-retaining seawater (PRS) sampler deployed during Leggo drop 1	Mariana Perspectives	partial_16S_seq
Pseudo-nitzschia amplicon sequence variants (ASVs)	Pseudo-nitzschia asv	C-AIM	Sequence_of_ASV
Ross Sea metaproteome peptide spectral counts		CORSACS	peptide_sequence
Sample numbers and associated data for bacteria sequence mapping	Sample numbers, barcode information, primer information and project name.	Contagious coral diseases?	barcode_sequence, linker_primer_sequence, barcode_name
SBDOM11 mini-remineralization expt.	bacterial abundance, growth rates, and DOC from SBDOM11 cruise	SBDOM	Pyrosequencing_barcode
Suppl 2d: Microbial community metadata (water samples)	Microbial community metadata - water samples	HERBVRE	BarcodeSequence, LinkerPrimerSequence
Trichodesmium field metaproteomes - peptide spectral counts		Cyanobacteria Warming Responses, TriCoLim, MM Saito, MM Proteins and Organics Tech	peptide_sequence
V3-V4 16S rRNA sequence accessions from whole larvae and juveniles of Gigantidas childressi and co-located water samples	V3-V4 16S rRNA sequence accessions from whole larvae and juveniles of Gigantidas childressi and co-located water samples	SALT	Sequence_File_ID
Virus dPCR assay primers	Primers used for Pleurochrysis carterae virus dPCR assays	Marine Chronic Viruses	forward_primer, reverse_primer, aplicon_length, probe, amplicon_sequence
Winam Gulf Metagenomic Time Series	Metagenomic Time Series of Winam Gulf, Lake Victoria from 2022-2023	ASI Lake Victoria	Library_ID

Programs associated with this parameter

None

Status message

Database

Contribute Data

Parameter: sequence