Dataset: Nutrients and Pigments
Deployment: BAMS-multi

Nutrients and Pigments

Principal Investigator:

Bess B. Ward (Princeton University)

Co-Principal Investigator:

Jackie L. Collier (Stony Brook University, SUNY Stony Brook)

Jeffrey Cornwell (University of Maryland Center for Environmental Science, UMCES/HPL)

Patricia A. Glibert (University of Maryland Center for Environmental Science, UMCES/HPL)

George A. Jackson (Texas A&M University, TAMU)

Dr Todd Kana (University of Maryland Center for Environmental Science, UMCES/HPL)

Mary A. Voytek (United States Geological Survey, USGS)

Jonathan P. Zehr (University of California-Santa Cruz, UCSC)

Contact:

Bess B. Ward (Princeton University)

BCO-DMO Data Manager:

Stephen R. Gegg (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

Biocomplexity of Aquatic Microbial Systems (BAMS)

Current State:

Final no updates expected

Version:

19 November 2008

Version Date:

2008-11-19

Data URL:

https://www.bco-dmo.org/dataset-deployment/451547/data

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Description

BAMS - Nutrients and Pigments data for 2001, 2002, 2003, 2004

Methods & Sampling

Dataset acquisition description

(none provided to date)

Deployment-specific acquisition description

(none provided to date)

Data Processing Description

Dataset Processing Description

Analysis methods:
ammonium (NH4), nitrate (NO3), nitrite (NO2), silicate (Si), o-phosphate (o-Phos) - Autoanalysis colorimetry

PN, PC - Exeter Analytical, Inc. (EAI) CE-440 Elemental Analyzer

Dissolved free amino acids (DFAA) - fluorescence o-phthalaldehyde method
(modification of the Parsons et al. (1984) and the Keil and Kirkman (1991))

Dissolved organic carbon (DOC) - Shimadu 5000A combustion analyzer.

Total dissolved nitrogen (TDN) and total dissolve phosphorus (TDP) - persulfate oxidation technique.

Urea - Enymatic method with detection of ammonium
(McCarthy, J. J. 1970) and direct conversion method (Goeyens, L., N. Kindermans, M. A. Yusuf, and M. Elskens.1998.)

Chlorophyll - fluorometric

Deployment-specific processing description

Analysis methods: 
 ammonium (NH4), nitrate (NO3), nitrite (NO2), silicate (Si), o-phosphate (o-Phos) - Autoanalysis colorimetry 
 
PN, PC - Exeter Analytical, Inc. (EAI) CE-440 Elemental Analyzer 
 
Dissolved free amino acids (DFAA) - fluorescence o-phthalaldehyde method 
(modification of the Parsons et al. (1984) and the Keil and Kirkman (1991)) 
 
Dissolved organic carbon (DOC) - Shimadu 5000A combustion analyzer. 
 
Total dissolved nitrogen (TDN) and total dissolve phosphorus (TDP) - persulfate oxidation technique. 
 
Urea - Enymatic method with detection of ammonium 
(McCarthy, J. J. 1970) and direct conversion method (Goeyens, L., N. Kindermans, M. A. Yusuf, and M. Elskens.1998.) 
 
Chlorophyll - fluorometric

More information about this dataset deployment

Funding

Award Number	Funding Source
OCE-9981482	NSF Division of Ocean Sciences
OCE-9981617	NSF Division of Ocean Sciences

Instruments

None available yet

Parameters

Supplied Name	Supplied description	Supplied Units	Standard Name
Site_ID	Alphanumeric string used as the ID for a sampling site	(none)	Site_ID
Site_Name	Alphanumeric string used as the name of a sampling site	(none)	no_bcodmo_term
date	BCO-DMO formatted sample date	YYYYMMDD	date
Sample_Date	Original spreadsheet formatted sample date	Da-Mon-Yr	no_bcodmo_term
Depth_Loc	Alphanumeric string describing depth at which a sample was collected (Surf, Deep). No actual depth (m) of collection provided.	(none)	Depth_Loc
NH4	Ammonium	uM	NH4
NO3	Nitrate	uM	NO3_NO2
NO2	Nitrite	uM	NO3_NO2
Si	Silica	uM	no_bcodmo_term
o_Phos	Organic Phosphate	uM	no_bcodmo_term
TDN	Total Dissolved Nitrogen	uM	no_bcodmo_term
TDP	Total Dissolved Phosphorus	uM	no_bcodmo_term
PC	Particulate Carbon	uM	no_bcodmo_term
PN	Particulate Nitrogen	uM	no_bcodmo_term
PC_to_PN	Ratio of Particulate Carbon to Particulate Nitrogen	dimensionless ratio	no_bcodmo_term
Urea	Urea	uM N	no_bcodmo_term
DFAA	Dissolved free amino acid	uM	no_bcodmo_term
DOC	Dissolved organic carbon	uM C	no_bcodmo_term
Chl	Chlorophyll	ug/L	no_bcodmo_term
DON	Dissolved Organic Nitrogen	uM	no_bcodmo_term
DOP	Dissolved Organic Phosphorus	uM	no_bcodmo_term
total_chl_c3	HPLC Pigment - total chlorophyll c3	ug/L	no_bcodmo_term
chl_c2	HPLC Pigment - chlorophyll c2	ug/L	no_bcodmo_term
chl_c1	HPLC Pigment - chlorophyll c1	ug/L	no_bcodmo_term
chlide_a	HPLC Pigment - chlorophyllide a	ug/L	no_bcodmo_term
phide_a	HPLC Pigment - phide a	ug/L	no_bcodmo_term
peridinin	HPLC Pigment - peridinin	ug/L	no_bcodmo_term
but_fuco	HPLC Pigment - butanoyloxyfucoxanthin	ug/L	no_bcodmo_term
fuco	HPLC Pigment - fucoxanthin	ug/L	no_bcodmo_term
neo	HPLC Pigment - neoxanthin	ug/L	no_bcodmo_term
pras	HPLC Pigment - prasinoxanthin	ug/L	no_bcodmo_term
viola	HPLC Pigment - violaxanthin	ug/L	no_bcodmo_term
hex_fuco	HPLC Pigment - hexanoyloxyfucoxanthin	ug/L	no_bcodmo_term
diad	HPLC Pigment - diadinoxanthin	ug/L	no_bcodmo_term
anthera	HPLC Pigment - anthera	ug/L	no_bcodmo_term
allo	HPLC Pigment - alloxanthin	ug/L	no_bcodmo_term
myxo	HPLC Pigment - myxoxanthin	ug/L	no_bcodmo_term
diato	HPLC Pigment - diatoxanthin	ug/L	no_bcodmo_term
zea	HPLC Pigment - zeaxanthin	ug/L	no_bcodmo_term
lut	HPLC Pigment - lutein	ug/L	no_bcodmo_term
cantha	HPLC Pigment - canthaxanthin	ug/L	no_bcodmo_term
gyr_diester	HPLC Pigment - gyroxanthin diester	ug/L	no_bcodmo_term
chl_b	HPLC Pigment - chlorophyll b	ug/L	no_bcodmo_term
DV_chl_a	HPLC Pigment - divinyl Chlorophyll a	ug/L	no_bcodmo_term
MV_chla	HPLC Pigment - monovinyl Chlorophyll a	ug/L	no_bcodmo_term
phytin_a	HPLC Pigment - phytin a	ug/L	no_bcodmo_term
carotenes	HPLC Pigment - carotenes	ug/L	no_bcodmo_term
total_chl_a	HPLC Pigment - total chlorophyll a	ug/L	no_bcodmo_term
lat	latitude, negative denotes South	decimal degrees	lat
lon	longitude, negative denotes West	decimal degrees	lon
depth	Depth of sample	meters	depth

Database

Contribute Data

Dataset: Nutrients and Pigments
Deployment: BAMS-multi

Dataset acquisition description

Deployment-specific acquisition description

Dataset Processing Description

Deployment-specific processing description

Database

Contribute Data

Dataset: Nutrients and PigmentsDeployment: BAMS-multi

Dataset acquisition description

Deployment-specific acquisition description

Dataset Processing Description

Deployment-specific processing description

Dataset: Nutrients and Pigments
Deployment: BAMS-multi