Dataset: Gulf of Alaska copepods: annotated transcriptomes
Deployment: TXF17

The dataset includes the annotation files of nine high-quality de novo transcriptomes generated from shotgun assemblies of short-sequence reads.
View Data: For data, See Dataset Metadata Page: https://www.bco-dmo.org/dataset/908689
Principal Investigator: 
Daniel K. Hartline (University of Hawaiʻi at Mānoa, PBRC)
Scientist: 
Petra H. Lenz (University of Hawaiʻi at Mānoa, PBRC)
Contact: 
Petra H. Lenz (University of Hawaiʻi at Mānoa, PBRC)
Technician: 
Matthew C. Cieslak (University of Hawaiʻi at Mānoa, PBRC)
Data Manager: 
Matthew C. Cieslak (University of Hawaiʻi at Mānoa, PBRC)
BCO-DMO Data Manager: 
Lynne M. Merchant (Woods Hole Oceanographic Institution, WHOI BCO-DMO)
Version: 
Deployment Synonyms:
 33A020170916
Description

These data are further described in the following publications:

Hartline, D. K., Cieslak, M. C., Castelfranco, A. M., Lieberman, B., Roncalli, V., & Lenz, P. H. (2023). De novo transcriptomes of six calanoid copepods (Crustacea): a resource for the discovery of novel genes. Scientific Data, 10(1). https://doi.org/10.1038/s41597-023-02130-1

Roncalli, V., Niestroy, J., Cieslak, M. C., Castelfranco, A. M., Hopcroft, R. R., & Lenz, P. H. (2022). Physiological acclimatization in high‐latitude zooplankton. Molecular Ecology, 31(6), 1753–1765. Portico. https://doi.org/10.1111/mec.16354

Roncalli, V., Cieslak, M. C., Germano, M., Hopcroft, R. R., & Lenz, P. H. (2019). Regional heterogeneity impacts gene expression in the subarctic zooplankter Neocalanus flemingeri in the northern Gulf of Alaska. Communications Biology, 2(1). https://doi.org/10.1038/s42003-019-0565-5

More information about this dataset deployment