Dataset: Tubeworms

Name: Tubeworms and associated organisms sampling information collected in the Pacific margin of Costa Rica. The collections are taken aboard R/V Atlantis in 2017 and 2018 using DSV Alvin. The 2019 collections were made aboard R/V Falkor using the ROV Subastian
Published: 2020-03-19
Keywords: Cold seep, methane seep, bushmaster, deep-sea tubeworms, oceans

Cite This Dataset

Spatial Extent: N:9.1193 E:-84.31208 S:8.92954 W:-84.84292

Temporal Extent: 2017-05-22 - 2018-11-04

Project:

Collaborative research: Quantifying the biological, chemical, and physical linkages between chemosynthetic communities and the surrounding deep sea (Costa Rica Seeps)

Principal Investigator:

Erik E. Cordes (Temple University, Temple)

Co-Principal Investigator:

Lisa A. Levin (University of California-San Diego, UCSD-SIO)

Victoria J. Orphan (California Institute of Technology, Caltech)

Christopher Neil Roman (University of California-San Diego, UCSD-SIO)

Gregory Rouse (University of California-San Diego, UCSD-SIO)

Contact:

Erik E. Cordes (Temple University, Temple)

BCO-DMO Data Manager:

Karen Soenen (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2020-03-19

Restricted:

Validated:

Yes

Current State:

Final no updates expected

Tubeworms and associated organisms sampling information collected in the Pacific margin of Costa Rica. The collections are taken aboard R/V Atlantis in 2017 and 2018 using DSV Alvin. The 2019 collections were made aboard R/V Falkor using the ROV Subastian

Abstract:

Sampling information from tubeworms and associated organisms collected from different seep sites off the Costa Rica margin. he collections were made aboard R/V Atlantis during 2017 and 2018 using DSV Alvin. In 2019 the collections were made aboard R/V Falkor, using the ROV Subastian.

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Description

Sampling information from tubeworms and associated organisms collected from different seep sites off the Costa Rica margin. The collections were made aboard R/V Atlantis during 2017 and 2018 using DSV Alvin. In 2019 the collections were made aboard R/V Falkor, using the ROV Subastian. Sampling information contains diameter, length, Phylum, Class, Order, Family and Genus.

Methods & Sampling

Samples were collected using deep sea vehicle Alvin and ROV Subastian, on R/V Atlantis and R/V Falkor. Methods used for collection involved either grabs, mussel pots, bushmaster junior, suction apparatus or net scoops.

Bushmaster – Original instruments created at Penn State to collect hydrothermal vent and methane seep communities. Hydraulic rods are attached to a very fine mesh that is deployed over the tubeworm patch of interest to collect the tubeworms and associated community. Once the assemblage is enclosed, the net is cinched closed using the submersible or ROV manipulator. Like the mussel pot, this allows for quantitative collections of tubeworm communities.

Data Processing Description

Samples were processed aboard R/V Atlantis and R/V Falkor and sent back to Temple University, PA, USA for processing.

BCO-DMO processing notes:

Adjusted certain lat and lon values to decimal degrees, with negative values for south and west.
Added ISO_DateTime_UTC column
Reformated date to YYYY-MM-DD
Reformated time to HH:MM
Adjusted column names to comply with database requirements

Data Files

File
tubeworms.csv (Comma Separated Values (.csv), 180.38 KB) MD5:b55d8c71c652597904b825712ccc4cdd Primary data file for dataset ID 806468

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1635219

Deployments

Deployment	Start Date	Platform	Investigator
AT37-13	2017-05-20	R/V Atlantis	Erik E. Cordes (Chief Scientist)	data info
AT37-13_Alvin_Dives	2017-05-21	Alvin	Victoria J. Orphan (Principal Investigator)	data info
AT42-03	2018-10-17	R/V Atlantis	Erik E. Cordes (Chief Scientist)	data info
AT42-03_Alvin_Dives	2018-10-17	Alvin		data info

Instruments

Bottom Sediment Grab Samplers

Supplied Name: Grab

Supplied Description:

Instrument Type

Generic Name: Bottom Sediment Grab Samplers

Acronym: BSGS

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/50/

Generic Description:

These samplers are designed to collect an accurate representative sample of the sediment bottom. The bite of the sampler should be deep enough so all depths are sampled equally. The closing mechanism is required to completely close and hold the sample as well as prevent wash-out during retrieval. Likewise, during descent the sampler should be designed to minimize disturbance of the topmost sediment by the pressure wave as it is lowered to the bottom.

Bushmaster

Supplied Name: Bushmaster (BM)

Supplied Description:

Original instruments created at Penn State to collect hydrothermal vent and methane seep communities. Hydraulic rods are attached to a very fine mesh that is deployed over the tubeworm patch of interest to collect the tubeworms and associated community. Once the assemblage is enclosed, the net is cinched closed using the submersible or ROV manipulator. Like the mussel pot, this allows for quantitative collections of tubeworm communities.

Instrument Type

Generic Name: Bushmaster

Generic Description:

Bushmaster samplers are original instruments created at Penn State to collect hydrothermal vent and methane seep communities. Hydraulic rods are attached to a very fine mesh that is deployed over the tubeworm patch of interest to collect the tubeworms and associated community. Once the assemblage is enclosed, the net is cinched closed using the submersible or ROV manipulator. This allows for quantitative collections of tubeworm communities.

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
Cruise_number	Cruise code #	unitless	cruise_id
Dive	Submersible dive #	unitless	dive_id
Location	Dive location	unitless	station
Latitude	Latitude of sample - south is negative	decimal degrees	lat
Longitude	Longitude of sample - west is negative	decimal degrees	lon
Depth	Depth sample collected at	meter (m)	depth
Date	Date sample collected on - format YYYY-MM-DD (in UTC)	unitless	date_utc
Time	Time sample collected at - format HH:SS (in UTC)	unitless	time_utc
Collected_in	Instrument/box collected in	unitless	sample_descrip
Tentative_ID	ID given on board the ship	unitless	sample
Diameter	Organism diameter at tube opening	millimeter (mm)	diameter
Length	Organism length to 2 mm	millimeter (mm)	length
Phylum	Phylum	unitless	phylum
Class	Class	unitless	class
Order	Order	unitless	order
Family	Family	unitless	family
Genus	Genus	unitless	genus
Species	Species	unitless	species
ISO_DateTime_UTC	ISO format of Date and Time in UTC (YYYY-MM-DDTHH:MMZ)	yyyy-MM-dd'T'HH:mm'Z'	ISO_DateTime_UTC
Notes	The 4mm note means that the tubeworm was measured down to 4mm instead of 2mm, probably because the root had broken away.	unitless	comment

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Database

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Dataset: Tubeworms