Dataset: High throughput tag-sequencing data from Gorda Ridge Hydrothermal vent field, including 16S and 18S rRNA gene sequences, and environmental metadata from Gorda Ridge Seamount, May/June 2019

ValidatedFinal no updates expectedDOI: 10.26008/1912/bco-dmo.828392.1Version 1 (2020-11-09)Dataset Type:Cruise Results

Principal Investigator: Sarah K. Hu (Woods Hole Oceanographic Institution)

Co-Principal Investigator: Julie Huber (Woods Hole Oceanographic Institution)

Scientist: Amy R. Smith (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Nancy Copley (Woods Hole Oceanographic Institution)

Program: Center for Dark Energy Biosphere Investigations (C-DEBI)

Project: Probing subseafloor microbial interactions via hydrothermal vent fluids: A focus on protists (Microbial eukaryotes at hydrothermal vents)

Abstract

High throughput tag-sequencing data from Gorda Ridge Hydrothermal vent field, including 16S and 18S rRNA gene sequences, and environmental metadata from Gorda Ridge Seamount, May/June 2019.

Cite Dataset

See SRA BioProject accession: PRJNA637089 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA637089) and BioSample accession IDs: SAMN15341559-SAMN15341619. Sequences are available via SRA (NCBI).

 

Related Datasets

IsRelatedTo
Dataset: Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities
Hu, S. K., Anderson, R., Huber, J. (2024) Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities collected on cruises AT42-22, TN405, and NA108 from May 2019 to Jun 2022. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-12-05 doi:10.26008/1912/bco-dmo.936069.1

Related Publications

Methods
Hu, S. (2017). RNA (and optional DNA) extraction from environmental samples (filters) v2 (protocols.io.hk3b4yn). Protocols.io. doi:10.17504/protocols.io.hk3b4yn

Hu, S. K., Huber, J., Smith, A. R. (2021) High throughput tag-sequencing data from Gorda Ridge Hydrothermal vent field, including 16S and 18S rRNA gene sequences, and environmental metadata from Gorda Ridge Seamount, May/June 2019. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2020-11-09 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.828392.1 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation