Dataset: AE1926 CTD Profile Casts

Name: CTD Depth Profile Cast Data for the InVirT-2019-BATS (Bermuda Atlantic Time Series) project taken in the on board of the R/V Atlantic Explorer AE1926 in 2019.
Published: 2021-08-23
Keywords: Bermuda Atlantic Time Series, BATS, virus, phage, metatranscriptomics, bacteria, diel, Sargasso Sea, oceans

Cite This Dataset

DOI:10.26008/1912/bco-dmo.835593.1

Spatial Extent: N:31.827679 E:0.4904 S:0.0147 W:-64.38645

Temporal Extent: 2019-10-12 - 2019-10-17

Project:

Collaborative Research: Inferring Cellular Lysis and Regeneration of Organic Matter by Marine Viruses (InVirT)

Principal Investigator:

Steven W. Wilhelm (University of Tennessee Knoxville, UTK)

Scientist:

Gary LeCleir (University of Tennessee)

Matthew Sullivan (Ohio State University)

Joshua Weitz (Georgia Institute of Technology, GA Tech)

Contact:

Steven W. Wilhelm (University of Tennessee Knoxville, UTK)

BCO-DMO Data Manager:

Karen Soenen (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2021-08-23

Restricted:

Validated:

Yes

Current State:

Final no updates expected

CTD Depth Profile Cast Data for the InVirT-2019-BATS (Bermuda Atlantic Time Series) project taken in the on board of the R/V Atlantic Explorer AE1926 in 2019.

Abstract:

CTD Depth Profile Cast Data for the InVirT-2019-BATS (Bermuda Atlantic Time Series) project taken in the on board of the R/V Atlantic Explorer AE1926 in 2019.

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Archival Copy

Version Date	Archive	Persistent Identifier	Date Assigned
2021-08-23	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.26008/1912/bco-dmo.835593.1	2021-08-23

Methods & Sampling

CTD casts were performed using the ships CTD rosette every 4 hours to survey the water column down to a depth of 500 meters.

The CTD used for this study had redundant/ replicate sensors for measuring many of the parameters.

Data Processing Description

The data is converted from its raw form using the “convert” program in the SBEDataProcessing software. The data then got binned based on depth with a bin size of 1 using the “Bin Average” program within the same software suite. BCO-DMO processing notes: * Did not serve cast InVirTC1 (test cast) * Removed PAR and SPAR columns due to uncertain values * Renamed fields to comply with database requirements * Joined CTD files with dates

Data Files

File
ctd.csv (Comma Separated Values (.csv), 5.84 MB) MD5:4b04b2ff888f7d38c6ce48bf3bc07dfe Primary data file for dataset ID 835593

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1829636

Deployments

Deployment	Synonyms	Start Date	Platform	Investigator
AE1926	InVirT	2019-10-12	R/V Atlantic Explorer	Steven W. Wilhelm (Chief Scientist)	data info

Instruments

CTD Sea-Bird

Supplied Name: Seabird SBE 9plus

Supplied Description:

Seabird SBE 9plus

Instrument Type

Generic Name: CTD Sea-Bird

Community Identifier: http://vocab.nerc.ac.uk/collection/L05/current/130/

Generic Description:

Conductivity, Temperature, Depth (CTD) sensor package from SeaBird Electronics, no specific unit identified. This instrument designation is used when specific make and model are not known. See also other SeaBird instruments listed under CTD. More information from Sea-Bird Electronics.

LI-COR Biospherical PAR Sensor

Supplied Name: SPAR

Supplied Description:

Surface PAR sensor. The SPAR sensor is typically mounted on the ship and does not submerge with the CTD.

Instrument Type

Generic Name: LI-COR Biospherical PAR Sensor

Acronym: LI-COR Biospherical PAR

Community Identifier: http://vocab.nerc.ac.uk/collection/L22/current/TOOL0074/

Generic Description:

The LI-COR Biospherical PAR Sensor is used to measure Photosynthetically Available Radiation (PAR) in the water column. This instrument designation is used when specific make and model are not known.

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
Cast_ID	ID of the CTD cast	unitless	cast
ISO_DateTime_UTC	Start time of CTD cast in ISO format (yyyy-mm-ddThh-dd-tt) in UTC timezone. Format: %Y-%m-%dT%H:%M:%SZ	unitless	ISO_DateTime_UTC
CStarTr0	Beam Transmission	percentage (%)	trans
Conductivity_0	Conductivity	siemens per meters (S/m)	cond
Conductivity_1	Conductivity	siemens per meters (S/m)	cond
Density_1	Density	kilograms per cubic meters (kg/m^3)	density
Density_2	Density	kilograms per cubic meters (kg/m^3)	density
Depth	Depth	meters (m)	depth
Descent_Rate	Descent Rate	meters per seconds (m/s)	descent_rate
Fluoresence_1	Fluoresence, Chelsea Aqua 3 Chl Con	micrograms per liters (ug/l)	fluor
Fluoresence_2	Fluorescence, WET Labs ECO-AFL/FL	miligrams per cubic meters (mg/m^3)	fluor
Latitude	Latitude, south is negative	decimal degrees	lat
Longitude	Longitude, west is negative	decimal degrees	lon
Oxygen_Raw_1	Raw oxygen	Volts (V)	O2_v
Oxygen_Raw_2	Raw oxygen, 2	Volts (V)	O2_v
Oxygen_1	Oxygen	milligrams per liters (mg/l)	O2
Oxygen_2	Oxygen, 2	milligrams per liters (mg/l)	O2
Pressure	Pressure	dB	press
Salinity_1	Practical salinity	PSU	sal
Salinity_2	Practical salinity	PSU	sal
Temperature_ITS_1	Water temperature	degrees Celsius (°C), International Temperature Scale - 1990	temp
Temperature_IPTS_1	Water temperature	degrees Celsius (°C)	temp_IPTS68
Temperature_ITS_2	Water temperature	degrees Celsius (°C), International Temperature Scale - 1990	temp
Temperature_IPTS_2	Water temperature	degrees Celsius (°C)	temp_IPTS68
CStarAt0	Beam Transmission	percentage (%)	trans

Status message

Database

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Dataset: AE1926 CTD Profile Casts