Dataset: Nutrient concentrations and cell/virus-like particles counts

Name: Nutrient concentrations and cell/virus-like particles counts
Published: 2022-09-21
Keywords: san pedro channel, marine virus, VLP, oceans

Cite This Dataset

DOI:10.26008/1912/bco-dmo.866781.1

Temporal Extent: 2012-07 - 2013-04

Project:

Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series (SPOT)

Principal Investigator:

Jed A. Fuhrman (University of Southern California, USC)

Co-Principal Investigator:

Ella Sieradzki (University of Southern California, USC)

Contact:

Jed A. Fuhrman (University of Southern California, USC)

BCO-DMO Data Manager:

Karen Soenen (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2022-09-21

Restricted:

Validated:

Yes

Current State:

Final no updates expected

Nutrient concentrations and cell/virus-like particles counts

Abstract:

Nutrient concentrations and cell/virus-like particles counts.

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Archival Copy

Version Date	Archive	Persistent Identifier	Date Assigned
2022-09-21	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.26008/1912/bco-dmo.866781.1	2022-09-21

Description

Related sequence data for the sampling locations can be found here:

* The project accession number for raw data on NCBI is PRJEB12234
* The project accession number for partial genomes of viruses is PRJNA472807

Methods & Sampling

Whole surface seawater for nutrients measurement were collected in triplicates in 50 mL conical tubes and kept in −20° C until flow-injection analysis at the Marine Sciences Institute Analytical Lab at University of California, Santa Barbara (http://www.msi.ucsb.edu/services/analytical-lab). Water collected by bucket.

Data Processing Description

Bacteria and viruses per ml seawater were counted on duplicate slides using SYBR green epifluorescence microscopy.

Data Files

File
nutrients.csv (Comma Separated Values (.csv), 1.27 KB) MD5:d5a68f482ba06c0609084a0336551f4a Primary data file for dataset ID 866781

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1737409

Deployments

None available yet

Instruments

None available yet

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
Date	Sample collection date Format: %Y-%m	unitless	date
Sample_ID	Sample identifier	unitless	sample
Latitude	Sample collection longitude	decimal degrees	lat
Longitude	Sample collection latitude	decimal degrees	lon
Phosphate	concentration of phosphate	micromolar (µM)	PO43-
Phosphate_flag	below detection	unitless	flag
Silicate	concentration of silicate	micromolar (µM)	Silicate
Silicate_flag	below detection	unitless	flag
Nitrite_Nitrate	concentration of nitrite/nitrate	micromolar (µM)	NO3_NO2
Nitrite_Nitrate_flag	below detection	unitless	flag
Chl_a	concentration of chlorophyll A	migrograms per liter (µg/L)	chl_a
Bacteria_archaea	number of cells per ml seawater measured by epifluroscent microscopy using SYBR gold	cells per ml	count
Bacteria_archaea_stdev	number of cells per ml seawater measured by epifluroscent microscopy using SYBR gold	cells per ml	std_dev
Viruses	number of virus like particles per ml seawater measured by epifluroscent microscopy using SYBR gold	viruses per ml	count
Viruses_stdev	number of virus like particles per ml seawater measured by epifluroscent microscopy using SYBR gold	viruses per ml	std_dev

Status message

Database

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Dataset: Nutrient concentrations and cell/virus-like particles counts