Dataset: Cyanobacteria cultures used to generate DNA reference library
Data Citation:
Casamatta, D., Hamsher, S., Biddanda, B. (2023) Cyanobacteria cultures used to generate DNA reference library from samples collected from sites in Alpena and Monroe, Michigan and Palm Coast, Florida between May and June 2022. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-10-17 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.911338.1 [access date]
Terms of Use
This dataset is licensed under Creative Commons Attribution 4.0.
If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.
DOI:10.26008/1912/bco-dmo.911338.1
View, Subset and Download Data
BCO-DMO is preparing to move to a new data access system that provides more functionality and features. This system, called ERDDAP, is free and open source with a strong and growing user community. Currently, we are providing the following data access and download capabilities for datasets as we work through our legacy data holdings. These capabilities will soon be available for all data at BCO-DMO:Data Access
- - view the data in an HTML table
- - filter the data before viewing or downloading in a variety of formats
- - download the data with comma-separated values (Excel-ready)
- - download the data with tab-separated values (Excel-ready)
- - download the data as GeoJSON. Try it out at geojson.io
- - download the data as a valid MATLAB file
- - download the data in NetCDF format
- - download the data in Ocean Data View format
Give Us Feedback
Do you have thoughts, questions or constructive feedback about data access at BCO-DMO? Let us know: feedback [at] bco-dmo [dot] org
Spatial Extent: N:45.1984 E:-83.3245 S:45.0854 W:-83.3251
Temporal Extent: 2022-05-02 - 2022-06-20
Principal Investigator:
Bopaiah Biddanda (Grand Valley State University, GVSU)
Co-Principal Investigator:
Dale Casamatta (University of North Florida, UNF)
Sarah Hamsher (Grand Valley State University, GVSU)
Student:
Davis Fray (Grand Valley State University, GVSU)
Callahan McGovern (University of North Florida, UNF)
BCO-DMO Data Manager:
Karen Soenen (Woods Hole Oceanographic Institution, WHOI BCO-DMO)
Version:
1
Version Date:
2023-10-17
Restricted:
No
Validated:
Yes
Current State:
Final no updates expected
Cyanobacteria cultures used to generate DNA reference library from samples collected from sites in Alpena and Monroe, Michigan and Palm Coast, Florida between May and June 2022.
Abstract:
These data are the information for each of the cultures generated from samples collected from three sites in Alpena, Michigan, one site in Monroe, Michigan, and one site in Palm Coast, Florida. Data are for cultures sequenced using Sanger sequencing and include taxonomic identification, location and sample type for samples used to develop the cultures.
Each of these cultures was developed from high-sulfur, low-oxygen environments formed by underwater sinkholes and springs that create extreme habitats populated by microbial mat communities. Our study investigated previously undescribed diatom diversity in these habitats. Sequences from these cultures contribute to tying molecular data to morphologically identified isolates, providing a bridge between these two data types that can be used to improve metabarcoding analyses.