Dataset: RBRconcerto data from daily sampling at the Santa Monica Pier
Deployment: SPOT_SMP

Principal Investigator:

David Caron (University of Southern California, USC)

Scientist:

Julie V. Hopper (University of Southern California, USC)

Sarah K. Hu (University of Southern California, USC)

Student:

Gerid A. Ollison (University of Southern California, USC)

Contact:

Julie V. Hopper (University of Southern California, USC)

Technician:

Lisa Mesrop (University of Southern California, USC)

BCO-DMO Data Manager:

Amber D. York (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Project:

Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series (SPOT)

Deployment Synonyms:

SPOT_SMP_2018, SPOT_SMP_2019

Data URL:

https://www.bco-dmo.org/dataset-deployment/746429/data

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Description

Methods & Sampling

Dataset acquisition description

Sampling and analytical procedures:
We used the RBRconcerto during the daily sampling period April 16-25th 2018 in surface waters off of the Santa Monica Pier, California. The RBRConcerto was lowered into the water for 10 minutes between 1 to 2 meters depth during which we sampled nearby sea water for downstream RNA extractions and 18S rRNA gene tag sequence processing.

Data Processing Description

Dataset Processing Description

RBRconcerto data was processed, trimmed and compiled with the OCE package in R (version 0.9-23). We trimmed the downcast and upcast parts of the data, resulting in consistent scans from 1000 to 2999 for each day.

BCO-DMO Data Manager Processing Notes (after communication with data submitter):

* added a conventional header with dataset name, PI name, version date
* modified parameter names to conform with BCO-DMO naming conventions
* blank values in this dataset are displayed as "nd" for "no data." nd is the default missing data identifier in the BCO-DMO system.
* added lat/lon values (in decimal degrees) to the dataset from the single deployment location provided in the metadata for this dataset.
* Added ISO_DateTime_UTC column from local time values
* pressure column rounded to two decimal places.

More information about this dataset deployment

Funding

Award Number	Funding Source
OCE-1737409	NSF Division of Ocean Sciences

Instruments

CTD Richard Brancker Research

Supplied Name: RBR concerto DO Fl CTD

Supplied Description:

The RBRconcerto instrument (Conductivity, Temperature, Pressure (Depth), Dissolved Oxygen, Fluorescence), calibrated in 2018 by RBR.

Instrument Type

Generic Name: CTD Richard Brancker Research

Acronym: CTD - RBR

Generic Description:

The RBR Conductivity, Temperature and Depth instrument:

http://www.rbr-global.com/products/ct-and-ctd-loggers/rbrconcerto-ctd

Parameters

Supplied Name	Supplied description	Supplied Units	Standard Name
Date	Date (local,UTC-7) in format m/d/yyyy	unitless	date
Time	Time (local,UTC-7) in format HH:MM:SS	unitless	time
conductivity	Conductivity	milli-Siemens per centimeter (mS/cm)	cond
temperature	Water temperature	degrees Celsius (C)	temp
pressure	Pressure	decibars (dbar)	press
dissolvedosaturation	Dissolved oxygen saturation	percent (%)	O2
chlorophylla	Chlorophyll a	micrograms per liter (µg/l)	chl_a
salinity	Salinity	Practical Salinity Units (PSU)	sal
scan	Scan (RBRconcerto measurement number)	unitless	scan
lat	Latitude	decimal degrees	lat
lon	Longitude	decimal degrees	lon
ISO_DateTime_UTC	Timestamp (UTC) in standard ISO 8601:2004(E) format YYYY-mm-ddTHH:MM:SSZ	unitless	ISO_DateTime_UTC

Database

Contribute Data

Dataset: RBRconcerto data from daily sampling at the Santa Monica Pier
Deployment: SPOT_SMP

Dataset acquisition description

Dataset Processing Description

Database

Contribute Data

Dataset: RBRconcerto data from daily sampling at the Santa Monica PierDeployment: SPOT_SMP

Dataset acquisition description

Dataset Processing Description

Dataset: RBRconcerto data from daily sampling at the Santa Monica Pier
Deployment: SPOT_SMP