Dataset: CliOMZ AT50-10 AUV Clio Data: Clio Dive Log

Name: Log file from AUV Clio taken on R/V Atlantis (CliOMZ AT50-10 expedition) from Golfito Costa Rica to San Diego USA in May-June 2023.
Published: 2024-09-09
Keywords: Clio, ClioMZ, Eastern Tropical Pacific, oceans

Cite This Dataset

DOI:10.26008/1912/bco-dmo.929764.1

Spatial Extent: N:25.094033 E:-88.964731 S:-10.052473 W:-118.131032

Temporal Extent: 2023-05-04 - 2023-06-07

Project:

Collaborative Research: Underexplored Connections between Nitrogen and Trace Metal Cycling in Oxygen Minimum Zones Mediated by Metalloenzyme Inventories (CliOMZ)

Principal Investigator:

Mak A. Saito (Woods Hole Oceanographic Institution, WHOI)

Co-Principal Investigator:

John Breier (University of Texas Rio Grande Valley)

Michael Jakuba (Woods Hole Oceanographic Institution, WHOI)

Scientist:

Allisa Dalpe (Woods Hole Oceanographic Institution, WHOI)

Natalia Moore (University of Texas Rio Grande Valley)

Contact:

Michael Jakuba (Woods Hole Oceanographic Institution, WHOI)

BCO-DMO Data Manager:

Karen Soenen (Woods Hole Oceanographic Institution, WHOI BCO-DMO)

Version:

Version Date:

2024-09-09

Restricted:

Validated:

Yes

Current State:

Final no updates expected

Log file from AUV Clio taken on R/V Atlantis (CliOMZ AT50-10 expedition) from Golfito Costa Rica to San Diego USA in May-June 2023.

Abstract:

This dataset contains the dive log from Autonomous Underwater Vehicle (AUV) Clio which was obtained during the CliOMZ AT50-10 expedition onboard R/V Atlantis from May-June 2023. The dataset contains metadata specifying sampling characteristics for each dive.

Expand/Collapse All

Archival Copy

Version Date	Archive	Persistent Identifier (PID)	Date PID Issued
2024-09-09	Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)	10.26008/1912/bco-dmo.929764.1	2024-09-09

Methods & Sampling

Dive log for Clio dives 031-050. In depth operation summary for each dive can be found in the Clio Operations Report (see related publications).

Problems/Issues

* Clio031: No data due to ballast issues * Clio032: BUSHBABY was inadvertently programmed with an incorrect port number for the last sample. The port number should have been 4. Optode failed to record data below 400 m * Clio033: Incubation chamber bags did not fill * Clio036: BUSHBABY started pumping too early on port 8 & 9 * Clio041: Vehicle surface an hour early due to a missed sample at 140 m.

BCO-DMO Processing

* Removed headers that were diving up the dive plan file
* Remove total volume calculation at bottom of dive plan file
* Converted dates to ISO format
* Converted lat/lon to decimal degrees
* Removed empty fields from diveplan [DATE TIME RECOVERY] - redundant

Data Files

File
929764_v1_clio_log.csv (Comma Separated Values (.csv), 107.75 KB) MD5:b00aae3868ab2fdabb6da3434630bbac Primary data file for dataset ID 929764, version 1

More Information about this dataset

Funding Sources

Funding Source	Award Number
NSF Division of Ocean Sciences	OCE-1924554

Deployments

Deployment	Synonyms	Start Date	Platform	Investigator
AT50-10		2023-05-02	R/V Atlantis		data info

Instruments

AUV Clio

Supplied Name:

Supplied Description:

Instrument Type

Generic Name: AUV Clio

Generic Description:

Clio is an autonomous underwater vehicle (AUV) created to accomplish the dual goals of global ocean mapping and biochemistry sampling. The ability to sample dissolved and particulate seawater biochemistry across ocean basins while capturing fine-scale biogeochemical processes sets it apart from other AUVs. Clio is designed to efficiently and precisely move vertically through the ocean, drift laterally to observe water masses, and integrate with research vessel operations to map large horizontal scales up to a depth of 6,000 meters. More information is available at https://www2.whoi.edu/site/deepsubmergencelab/clio/

Parameters

Date and time formats are described in python strftime() syntax.

Supplied Name	Supplied description	Supplied Units	Standard Name
CRUISE_ID	Cruise name	unitless	cruise_id
PROGRAM_ID	Program name	unitless	project
CLIO_DIVE_ID	Clio dive number, sequential	unitless	dive_id
UID	Unique identifier of format dive#_SUPRsamplername_SUPRvalve# (TC = Tigerclaw; BB = Bushbaby)	unitless	sample
STATION	Cruise station number	unitless	sta_id
DEPTH_STATION_TYPE	Adaptive or non-adaptive sampling	unitless	sample_descrip
DEPTH_STATION_ORDER	The order in which samples were collected	unitless	sample_descrip
DEPTH_STATION_PARAMETERS	The depth at which the vehicle was commanded to sample. Note for adaptive samples, this was the initialized depth, but may have been changed with the adaptive behavior. See actual depth column.	meters	sample_descrip
BAY	The payload bay number (1-4) on AUV Clio where the SUPR sampler that took the sample was installed	unitless	sample_descrip
SUPR_UNIT	Which Supr unit took the sample (BUSHBABY or TIGERCLAW)	unitless	sample_descrip
SUPR_VALVE	Which valve the sample was pumped on	unitless	sample_descrip
SUPR_FILTER_INCUBATOR	The filter number as installed in the SUPR sampler	unitless	sample_descrip
FILTERS	The type of filter installed	unitless	sample_descrip
STOP_CONDITION_TIME_VOL_RATE	What triggers sampling to stop: time, volume, or rate	minutes (time), liters (volume), liters per minute (rate)	sample_descrip
STOP_TIME	The duration at which the SUPR sampler is set to stop pumping (unit = minutes) when time is used as the stop criterion.	minutes	time_end
STOP_VOLUME	The volume at which the SUPR sampler is set to stop pumping (unit = liters) when volume is used as the stop criterion.	liters	sample_descrip
STOP_RATE	The minimum flow rate below which the SUPR sampler is set to stop pumping (unit = liters per minute) when flow rate is used as the stop criterion.	liters per minute	sample_descrip
INCUBATOR_PURGE_TIME	The duration set for the incubator to perform its purge sequence	minute	sample_descrip
INCUBATOR_FILL_TIME	The duration set for the incubator to fill	minute	sample_descrip
SAMPLE_START_TIME_UTC	The time at which pumping started for the sample	UTC	time_start
ACTUAL_DEPTH_m	The actual depth the sample was taken at. This value is the average depth over time time period spent sampling.	meters	depth
VOLUME_FILTERED_L	The amount of seawater pumped during the sample	liters	vol_filt
TIME_SPENT_FILTERING_min	Actual time spent pumping (should match stop time)	minutes	time_inc
VEHICLE_COMMENT	Vehicle comment	unitless	comment
SUBMERGE_TIME_UTC	Time of last Iridium update before submerging Format: %Y-%m-%dT%H:%MZ	unitless	ISO_DateTime_UTC
SUBMERGE_LAT	Latitude of last Iridium update before submerging	decimal degrees	lat
SUBMERGE_LON	Longitude of last Iridium update before submerging	decimal degrees	lon
SURFACE_TIME_UTC	Time of first Iridium update after surfacing (note that Clio could be on surface for a significant amount of time due to other ship operations before recovery) Format: %Y-%m-%dT%H:%MZ	unitless	ISO_DateTime_UTC
SURFACE_LAT	Latitude of first Iridium update after surfacing (note that Clio could be on surface for a significant amount of time due to other ship operations before recovery)	decimal degrees	lat
SURFACE_LON	Longitude of first Iridium update after surfacing (note that Clio could be on surface for a significant amount of time due to other ship operations before recovery)	decimal degrees	lon
LAUNCH_TIME_UTC	Vehicle released from ship Format: %Y-%m-%dT%H:%MZ	unitless	ISO_DateTime_UTC
RECOVERY_TIME_UTC	Vehicle back on deck Format: %Y-%m-%dT%H:%MZ	unitless	ISO_DateTime_UTC
NOTES	Dive notes	unitless	comment

Status message

Database

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Dataset: CliOMZ AT50-10 AUV Clio Data: Clio Dive Log