Parameter: accession number

Short Description:

accession number

Short Name:

accession_number

Official Name:

accession number

Units:

unitless

Graphable:

No Data Value:

Description

Database identifier assigned by repository and linked to GenBank or other repository.

Datasets associated with this parameter

Dataset Name	Brief Description	Project	PI-Supplied Parameter Name
16S and 18S rRNA gene amplicon sequences	16S and 18S rRNA gene amplicon sequences	HHQSignals	bioproject_accession, biosample_accession
16S rRNA and hydrazine oxidoreductase genes	Sequence accession numbers of 16S rRNA and hydrazine oxidoreductase genes (hzo) from Cape Fear River Estuary.	Estuarine ANAMMOX	accession_number_link
16S rRNA clone library	NCBI Accessions for 16S rRNA clone libraries made with bacterial 8F and 519R primers.	CoFeMUG	NCBI_Accession
16S rRNA gene and particulate monooxygenase diversity	16S rRNA gene and particulate monooxygenase diversity	Authigenic Carbonate Ecosystems	accession_number
16S rRNA gene clones from NE Pacific bacterioplankton	16S rRNA gene clones from bacterioplankton in the NE Pacific Ocean	Sulfur Oxidizers	NCBI_accession
16S rRNA gene from DNA	16S rRNA gene (from DNA)	Subvent_Biosphere_Sediments	MGRAST_Accession_ID
16S rRNA gene sequences from iron mats	Accession links to NCBI for 16S rRNA gene sequences from iron mats	Ecology of Vent Mats	accession_id
16S rRNA gene sequences of bacteria from members of an Arctic clade	16S rRNA gene sequences of bacteria including some of Arctic96BD-19/SUP05 clade	Sulfur Oxidizers	NCBI_Accession
16S rRNA sequence and collection data	Microbial 16S rRNA sequence data from East Pacific Rise biofilms	Microbial Communities at Deep-Sea Vents	BioProject, SRA_experiment, NCBI_accession
16S rRNA Sequences	16S rRNA sequence data from venting fluids and microbial mats at Axial Seamount, 2011.	AXIAL	bioproject_accession, bioproject_link, biosample_number, biosample_link
515F-926R 16S rRNA accessions	515F-926R 16S rRNA accessions, Mariana and Kermadec trenches, 2014	Mariana Perspectives	Bioproject_link, Biosample_link
5c_BLAST results	GenBank BLAST results of copepod nauplii gut contents	food limitation in copepod nauplii	GenBank_id
Accession Numbers	Accession numbers and characteristics of 33 microsatellite loci developed for Gracilaria vermiculophylla.	Gracilaria effects	accession_num, accession_URL
Accession numbers	Palatability of non-native alga	Genetic Adaptation Marine Inv	accession_number, accession_number_text
Accession numbers (P. carterae viruses and field samples)	Accession numbers for genetic sequences from virus-enriched field samples and P. carterae CCMP 645 culture co-infections	Marine Chronic Viruses	accession_id
Acropora hyacinthus ITS2 amplicon sequencing		Moorea coral bleaching	Accession
AE1913 Protein Spectral Counts		Nutrient Stress Responses and AUV Clio	kegg_id, enzyme_comm_id, pfams_id
Alteromonas ancestor	Clones of Prochlorococcus MIT9312 and link to BioProject	P-ExpEv	bioproject_accession, biosample_accession, bioproject_link_text
Alteromonas macleodii MIT1002 replete proteome	Alteromonas macleodii MIT1002 replete proteome	C-CoMP Model Bacteria	ncbi_id
Amplicon sequence variants (ASVs) and taxonomy of Pseudo-nitzschia spp.		C-AIM, NES LTER, NBPTS	NCBI_GenBank_Accession_Number
Anaerobic Peru Margin 2002	Sub-seafloor metatranscriptomes from anaerobic Peru Margin sediments collected on JOIDES Resolution, Leg 201.	Microbial Euk Div Mar Subsurface	accession_number, SRA_number, SRA_URL, accession_URL
Anaerobic Sediment 18S rRNA amplicons	Iberian Margin Anaerobic Sediment 18S rRNA amplicons.	Subseafloor Microbial Ecology	BioProject_ID, BioProject_URL, SRA_ID, SRA_URL
Anderson & Rynearson 2020: Skeletonema CHN	CHN	Phytoplankton Community Responses	GenBank
Anderson & Rynearson 2020: Skeletonema thermal growth	Anderson & Rynearson 2020: Skeletonema thermal growth	Phytoplankton Community Responses	GenBank
ARISA bin taxonomy	Putative taxonomic information for ARISA bins as generated from clone libraries,	Bacterial, Archaeal, and Protistan Biodiversity, Marine Viral Dynamics	Accession, SecAccession
Assembled genome sequence for the virus ANMV-1	Assembled genome sequence for the virus ANMV-1	Viruses in Methanotrophic Marine Ecosystems	Accession
Assembled metagenome sequences > 500 bp	Assembled metagenome sequences > 500 bp from EPR, Lo'ihi, and control	EPR and Loihi basalt genomes	NCBI_accession
Asteroid viral and bacterial metagenome genetic accession information		Sea Star Microbiology	Accession_number
Atlantic silverside (Menidia menidia) cDNA transcriptome and TSA accessions	Atlantic silverside (Menidia menidia) cDNA transcriptome and TSA accessions	Fishery Genome Changes	accession_id, BioProject
Atlantic silverside (Menidia menidia) raw low-coverage genomic sequence accessions	Accession numbers for raw low-coverage genomic sequence reads from 876 different Atlantic silverside individuals	Fishery Genome Changes	BioSample_Accession, BioProject_Accession, SRA_Accession
bacterioplankton_dmdA_sequences	Links to published dmdA sequences from marine bacterioplankton from Sapelo Island, GA.	En-Gen DMSP Cycling	accession_number
BATS_cDNA_sequences	Link to published bacterial cDNA sequences from BATS station.	En-Gen DMSP Cycling	repository
Brothers Volcano Metagenome-Assembled Genome Accession Numbers	Brothers Volcano Metagenome-Assembled Genome Accession Numbers	Brothers Volcano Microbiology	WGS_accession
BWLD-C7 subsurface microbes	BWLD-C7 subsurface microbes	Virus-host anoxic sediment	sample_accession, bioproject_accession
Candidatus Thioglobus autotrophica strain EF1	Complete genome sequence - first cultured chemoautotroph from SUP05 clade	Sulfur Oxidizers	GenBank_accession
Candidatus Thioglobus singularis strain PS1	Complete genome sequence - first cultured mixotroph from SUP05 clade	Sulfur Oxidizers	GenBank_accession
Cannon_2013_T2: NCBI accessions	Hemichordata and Echinodermata NCBI accessions	Antarctic Inverts	accession_rDNA_18S, accession_rDNA_16S
Cannon_2014_S2: Hemichordata and Echinodermata sample log and accessions	Hemichordata and Echinodermata transcriptome NCBI accessions	Antarctic Inverts	NCBI_accession
Cariaco Meta-Omics iTAG datasets	Description metadata and links for iTAGs	CariacoMetaOmics	accession_link_text
CARP accession numbers	Sequence accession numbers for coral acid rich proteins (CARPs) from Stylophora pistillata.	CROA	accession_number
Chemistry and cell counts	Chemistry and cell counts of formation fluids from North Pond	North Pond Microbes	bioproject_id
Circovirus DNA Sequence Information	DNA sequences of viruses associated with Copepods	Viruses in Copepods	accession_no
cluster analysis - cross-phyla protein clustering	Cross-phyla clustering of non-redundant carbonate organic matrix proteins grouped by hierarchical clustering.	CROA	coral_accession, mollusk_accession, sea_urchin_accession
COLI 16S rRNA sequences	16S rRNA Sequences from cathode-oxidizing lithoprophic isolates (COLI) from Catalina Harbor Marine sediments.	PassElectronsThruMarSed	accession_num, accession_link
Community 16S rRNA gene sequences	16S rRNA accessions	Vibrio-dust deposition	BioProject
Copepod Bacteria RNA transcriptome Sequences	Bacteria assemblages associated with Eurytemora affinis in both salt and fresh water	CopepodMicrobiome	SRA_accession_number
Copepod RNA-Seq sample information and accessions		Neocalanus Gulf of Alaska	BioProject, NCBI_Biosample_Acc_No, NCBI_SRX_Acc_No
Coral Associated Microbes on Mo'orean Coral Reefs	Bacteria and Archaea found on coral, sediment, and water in Mo’orea, French Polynesia	Moorea Virus Project, Ecosystem Impacts of Coral Bleaching	BioSample_accession
Coral cDNA Expressed Sequences	cDNA Expressed Sequence Tags for the corals Acropora palmate and Orbicella faveola	SymBioSys	GenBank_GI, GenBank_ACC, EST_Name
Coral colony sequece accessions: Hidden resilience to recurrent bleaching		Bleaching American Samoa	Accession
Coral colony sequence accessions: The genomics of recovery from coral bleaching		Bleaching American Samoa	accession
Coral images and accession numbers	Species images and accession numbers for tissue, mucus, and holobionts analyzed.	Coral Microbial Relationships	mucus_accessionLink, holobiont_accessionNumber, holobiont_accessionLink, tissue_accessionNumber, tissue_accessionLink, mucus_accessionNumber
coral life stages - Illumina	Illumina sequenced 16S rRNA genes amplified from different life stages of 2 corals	MiCoDe	BioSample, SRA_accession
Coral reef seawater microbial communities	Coral reef seawater microbial communities	Coral Exometabolomes	NCBI_BioProject_accession_number, NCBI_BioSample_accession_number
Coral Sample Microbiome	Coral Sample Microbiome	Killer Seaweeds	Accession, BioProject, Object_ID
Coral SSU rRNA gene database	Coral SSU rRNA gene database	Coral Microbial Relationships	Sequence_Identifier, gi_number, Accession_number, Accession_Number
Coral-bacterioplankton data from mesocosm experiments	Bacterioplankton data from coral and coral mucus aquaria experiments.	Coral Microbial Relationships	accession_number
Crassostrea virginica gonad MBD-BSseq	GenBank metadata for Eastern oyster gonad methylation and OA	Epigenetics to Ocean	bioproject_accession, biosample_accession
Cyanobacteria cultures used to generate DNA reference library	Cyanobacteria cultures accessions	Tango in the Mat World	NCBI_Accession
Cyanomyovirus genome sequences	Genbank accession numbers for genome sequences of cyanomyoviruses collected from the coastal waters of North America	Cyanophage-Synechococcus interactions, Cyanophage Evolutionary Ecology	Genbank_accession
dataset1_Krug_et_al_2015: Suppl. Table 3: Accessions	Table 3: accessions: COI, 16S, 28S. H3 for ~200 spp.	PLDvFST	accession_COI, accession_16S, accession_H3
dataset2_Krug_et_al_2012: Elysia accessions	Elysia spp. accessions for COI, 16S, H3	PLDvFST	NCBI_COI_accession, NCBI_16S_accession, NCBI_H3_accession
dataset3_Supp1_Krug_et_al_2011: Elysia sequences	Accessions for COI, 16S, H3 for 18 Elysia species	PLDvFST	accession_16S, accession_H3, accession_COI
dataset4_Krug_et_al_2012: Philine sequences	Accessions for 16S for Philine species	PLDvFST	accession_16S
dataset5_Vendetti_et_al_2012: Elysia pusilla sequences	Accessions for COI, 16S, H3 from Elysia pusilla and E. spp.	PLDvFST	accession_COI, accession_16S, accession_H3
dataset6_Krug_et_al_2013: Sequences	Accessions for COI, H3 for three species complexes	PLDvFST	accession_COI, accession_H3
dataset8- Oxynoe sequence data	Species names, sample codes, and collection details for sequenced taxa used in phylogenetic analyses.	PLDvFST	specimen_accession_numbers, accession_COI, accession_16S, accession_H3
Deep Biosphere Eukaryotic rRNA	Sub-seafloor sediment eukaryotic rRNA collected on JOIDES Resolution Legs 201 and 204, R/V Maria Merian at North Pond, and R/V Meteor at the Benguela Upwelling System.	Microbial Euk Div Mar Subsurface	SRA_number, SRA_URL
Deep-sea larvae for microbiome study	Deep-sea larvae for microbiome study	EPR Functional Diversity, Mariana Back-arc Vents, Metacommunity Dynamics	microbiome_16S_Dryad
Delta Nitrification Study - GenBank Accession Numbers	GenBank accession numbers for ammonia oxidizer genes.	N-Cycling Microbial Communities	accession_numbers
DHAB halocline - nematodes	Metatranscriptome data for pools of 10 nematodes picked from halocline and nearby control sediments.	DHAB Metazoans	BioSample_id, SRA_exp_id, SRA_run_id, BioProject_id
Diatom cultures used to generate DNA reference library	Diatom culture accessions	Tango in the Mat World	NCBI_Accession
Diatom Matrix Mass Spectrometry	MetaboLights accessions: MS samples	Metabolic Currencies, Carbon Currencies Microbes	MetaboLights_accession_number
Diatom Matrix NMR	MetaboLights accessions: NMR samples	Metabolic Currencies, Carbon Currencies Microbes	MetaboLights_accession_number
Diatom Matrix RNAseq	NCBI accessions	Metabolic Currencies	BioSample, NCBI_Genome_Accession, NCBI_Bioproject_Accession
Diatom microbiome	Identification of microbiome from different Pseudo-nitzschia species	bacteria, virus, diatom interactions	NCBI_bioproject_id
Diatom reference sequences	Reference sequences, genes, and K0 numbers for sampled diatoms.	Polar_Transcriptomes	K0_accession_link_text, K0_number, K0_accession_link, accession_number, accession_link_text, accession_link
DICE_sequences	Links to published dmdA, cDNA, and RNA sequences from the Dauphin Island Cubitainer Experiment (DICE).	En-Gen DMSP Cycling	sample_accession
Diel_Metatrans	Diel_Metatrans	C-MORE, CANON	BioProject, SRX, BioSample
DNA and cDNA (RNA) 18S V4 tag sequences from 5m and DCM		SPOT	bioproject_accession, Accession
DNA primer accession numbers	Accession numbers of microsatellite DNA primers and links to GenBank.	Pop connectivity of coral reef fishes	GenBank_accession_number, accession_number_link
Domel_2017_T1: Pallenopsis patagonica specimen and outgroups with accessions	Pallenopsis patagonica specimen and outgroups with accessions	Antarctic Inverts	ZSM_voucher_number, COI_GenBank_BOLD_number, ITS_GenBank_BOLD_number
Dorado Outcrop basalt DNA sequences	Accession numbers for clone and Illumina amplicon sequence libraries from Dorado Outcrop basalts	Dorado ridge flank environment	accession_number, accession_link
DYEatom: Metatranscriptome accessions and assembled contigs		Diatom Silicification	BioSample, Accession, ID
EPR 9 North Plume Particles	Bacterial 16S rRNA sequences from hydrothermal plume particles	RESET06	accession_num, accession_link, popset_id, popset_link
EPR 9N Inactive Sulfides	Bacterial 16S rRNA sequences from inactive sulfide chimneys	Bacwards	accession_num, accession_link, popset_id, popset_link
ESP 2016 Seq	Metagenomic, metatranscriptomic, and single cell sequencing data from the Fall 2016 ESP deployment in Monterey Bay, CA	OceanSulfurFluxBact	GOLD_Project_ID
ETNP ODZ Metagenomes April 2012	Assembled metagenomes collected in the Eastern Tropical North Pacific Oxygen Deficient Zone in April 2012 on TN278	EAGER Deep Prochlorococcus	BioProject_Accession, BioSample_Accession_Number, Short_Read_Archive_Accession_Number, Whole_Genome_Shotgun_Accession_Number, WGS_Velvet_Assembly, WGS_MEGAHIT_Assembly
ETNP Viromes	Accession Numbers of Viral Metagenomes from the ETNP	OMZ Viruses	JGI_Project_Id, IMG_Genome_ID
Eukaryotic viruses encode the ribosomal protein eL40	Eukaryotic viruses encode the ribosomal protein eL40	GVs NPSG	Genbank_accession
Extracellular reef seawater metabolites from the Jardines de la Reina reef-system		Coral Exometabolomes, RAPID Mass Spec for Dispersants	MetaboLights_Study_Number
GenBank accessions	GenBank accession numbers and links for microbial isolates from sediment samples collected at Paleochori Bay, Milos island, Greece	Hydrothermal Autotrophic Carbon Fixation	GenBank_acc
Gene expression profiles from high CO2-adapted Trichodesmium	gene expression profiles obtained from high through put illumina sequencing of multiple long-term evolved lines of Trichodesmium.	Trichodesmium in High CO2	accession_number
Gill 16S rRNA amplicon sequencing	GenBank Short Read Archive (SRA) sequence accession numbers for 16S rRNA gene amplicon data from the gills of Alviniconcha species, Ifremeria nautilei, and Bathymodiolus septemdierum.	Eco Dyn W Pacific Vents	SRA_Accession
Glaucus atlanticus sample voucher log	Glaucus atlanticus sample locations, museum voucher and GenBank accession numbers	Neuston Phylogeny	accession_num
GO-SHIP SPE-DOC	GO-SHIP SPE-DOC	DOC 14C and 13C	UCI_AMS_Number
Gulf of Alaska copepods: annotated transcriptomes	The dataset includes the annotation files of nine high-quality de novo transcriptomes generated from shotgun assemblies of short-sequence reads.	Diapause preparation, Neocalanus Gulf of Alaska	TSA_Master_Accession
Halanych-Kocot_2014_T1: NCBI accessions	Antarctic invertebrate collection locations and NCBI SRA accessions	Antarctic Inverts	NCBI_SRA_accession
Halanych_2013_T1: NCBI accessions	NCBI accessions	Antarctic Inverts	accession_rDNA_18S, accession_rDNA_16S
haplotype_accession_numbers	Accession numbers for planktonic ciliate haplotypes	CiliateDivGenePop	accession_number
Harder_2016_T1: sea spider Pallenopsis sampling sites and COI NCBI accessions	Sea spider Pallenopsis sampling sites and COI NCBI accessions	Antarctic Inverts	GenBank_accession
Havird_2015_T1: NCBI accessions: COX and PXDN	NCBI accessions	Antarctic Inverts	NCBI_accession
Havird_2015_T2: NCBI accessions: MPO and PXDN	NCBI accessions: MPO and PXDN outgroups	Antarctic Inverts	NCBI_accession
Hawaiian reef fish genetic accessions 2016	Genetic accessions at NCBI Genbank	Hawaiian Fish Origins	Genbank_Accession_Range
Heterosigma akashiwo acclimation	Heterosigma akashiwo acclimation - BioProject PRJNA377729	P-ExpEv	bioproject_accession
Hurricane Harvey Coral Gene Expression		Rapid Reefs Harvey	SRA, Accession
Hydrographic and nutrient data		ETNP_ParticleOmics	NCEI_accession
Illumina Sequences		SedimentaryIronCycle	sequence_accession_number
Invertebrate Barcodes from Papua New Guinea		OA_Gradient_Biodiversity	Accession
Isolate information	Isolate information on genes found in samples collected on LMG1411.	Polar_Transcriptomes	GenBank_bestHit, accession_number, accession_link
Isolation culturing and sequencing of bacteria and viruses	Environmental data describing microbes and viruses submitted to NCBI to generate BioSample accession numbers.	Marine Bacterial Viruses	bioproject_accession
ITS_sequence_accessions	Diatom ribosomal DNA sequence accession numbers.	Diatom Gene Flow	accession_number, accession_number_link
Janosik_2013_T2: outgroup species and accessions	Outgroup species and accessions	Antarctic Inverts	NCBI_accession
JdF Subsurface Aminicenantes		Slow Life in Crust	WGS_project_accession
JTMD Mytilus population genetics	Population analysis and metagenomics of Japanese tsunami marine debris mussels	JTMD-BF	accession_number
Juan de Fuca Ridge Flank SSU rRNA gene sequences	SSU rRNA gene sequences from marine sediments, marine subseafloor, and deep seawater	microJdFR	Accession_id, Accession_Link, BioSample_ID, BioProjectID
Kaneohe Bay RNA virus metagenomes	Pyrosequencing reads (454) of marine RNA virus metagenomes	Diversity and ecology of marine RNA viruses	iMicrobe_accession
Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry	Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry	Pelagibacteromics	Metagenome_ID
Keratoisis Radiocarbon Dates	Keratoisis Radiocarbon Dates	Bamboo Coral Boron Isotopes	Accession_Number
kinetoplastid SSU rRNA seq.	Microbial metatranscriptomics: upper and lower halocline water column	Pickled Protists	accession_number
Krill barcodes	Euphausiid DNA barcode metadata and accession numbers from global oceans	Red Sea Krill	NCBI_accession
Labyrinthulomycete genetic sequences	samples around Long Island, NY for Labyrinthulomycete PCR and sequences	LabyLI	accession_number
Lau Basin and Loihi Seamount microbial mats	Metegenomic sequences from Lau Basin low temperature vents and Loihi Seamount.	Vent Mn-Fe Microbes	BioProject_URL, BioProject
Lau Basin Bacterial Low Temp Geomicrobiology	Bacterial 16S rRNA sequences from seafloor rocks (silicates and sulfides)	Lau Basin Geomicrobio	accession_num, accession_link, popset_id, popset_link
Marine Bacterial Isolates	Bacterial isolates from marine diatom Psuedo-nitzschia	bacteria, virus, diatom interactions	GenBank_accession
Metabarcoding zooplankton at station ALOHA: NCBI SRA accession numbers	NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample	Plankton Population Genetics	bioproject_accession, biosample_accession
Metabarcoding zooplankton at station ALOHA: OTU tables and fasta files	Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU	Plankton Population Genetics	NCBI_top_hit
Metagenome	Metagenomic data	Subvent_Biosphere_Sediments	MGRAST_Name, MGRAST_ID
Metagenome of Bleached and Non-bleached corals		Moorea Virus Project	BioSample
Metagenome sequencing samples	Metagenome sequencing samples	JdFR Strain level	IMG_Genome_ID
Metagenomes - Iberian Margin	Iberian Margin Anaerobic Sediment Metagenomes.	Subseafloor Microbial Ecology	SRA_ID, SRA_URL
metatranscriptomics - Niskin vs. in situ	Microbial metatranscriptomics: Niskin vs. in situ sampler	Pickled Protists	accession_number
metatranscriptomics - upper_lower halocline	Microbial metatranscriptomics: upper and lower halocline water column	Pickled Protists	accession_number
Methane seep 16S rRNA sequences	16S rRNA gene sequences of cells in marine methane seep sediments	Cell-sorting and enrichment	accession_number
Microbial 16S rRNA gene amplicon SRA numbers	Microbial 16S rRNA gene amplicon SRA numbers	DeepCCZ	bioproject_accession
Microbial community composition McMurdo Spiophanes beds	McMurdo Spiophanes beds 16s V4 region community composition	McMurdo Benthos	accession_link, accession
Microbial community composition of the Cinder Cones Cold Seep	Microbial community composition of the Cinder Cones Cold Seep	Cinder Cone Seep	accession
Microbial eukaryotic diversity: Axial Seamount SRA	Axial seamount SRA	Microbial eukaryotes at hydrothermal vents	bioproject_accession
Microbial eukaryotic diversity: Gorda Ridge SRA	Gorda Ridge SRA	Microbial eukaryotes at hydrothermal vents	bioproject_accession
Microbial eukaryotic diversity: Mid-Cayman Rise SRA dataset	18S rRNA amplicon sequencing of microbial eukaryotes	Microbial eukaryotes at hydrothermal vents	Experiment_Accession
Microbial eukaryotic focused metatranscriptome data		SPOT	SRA_run, SRA_study, bioproject_accession, biosample_accession
Microbial isolates	Microbial isolates from sediment samples collected at Paleochori Bay, Milos island, Greece	Hydrothermal Autotrophic Carbon Fixation	DSMZ_accession, GenBank_acc
Microbiome dynamics of coral reef and cleanerfish	Microbiome dynamics of coral reef and cleanerfish	Cleanerfish microbiomes	SRA_accession
Microsatellite primers for Pollicipes elegans	Microsatellite primer sequences from Pollicipes elegans	Gene flow across the tropics	NCBI_accession
mRNA sequencing - RNAseq	mRNA sequencing - RNAseq	OA pH, Temp, Calc Inverts	Accession_Number
MtCOI sequence accessions - Pollicipes elegans	Cytochrome oxidase I DNA sequences from Pollicipes elegans	Gene flow across the tropics	NCBI_accession
MWS accession numbers	GenBank accession numbers for pathogens identified as causing MWS from Kaneohe bay, Oahu, Hawaii	coral-pathogen interaction	Genbank_accession_num, accession_link
NCBI accession numbers for S. arcuata and S. meunieri	NCBI accession numbers for S. arcuata and S. meunieri	Ciliate Omics	Sequence_Accession
NCBI BioSample accessions for viruses and microbes	NCBI issued accession numbers for BioSamples of microbes and viruses.	Marine Bacterial Viruses	BioProject_ID, BioSample, accession, BioSample_text
Nitrite reductase genes sequence accessions	Nitrite reductase genes sequence accessions	N-Cycling Microbial Communities	accession_id, accession_link, accession_range
Nitrosopelagicus brevis genome	NCBI accession number link to the closed genome of Nitrosopelagicus brevis CN25	AmoA Archaea	accession no.
Nmarina global proteome	Nmarina global proteome	CliOMZ	Accession_number
Nmarina targeted proteome	Nmarina targeted proteome	CliOMZ	Accession_number
NP_16SrRNA_Huber	v6 16S rRNA from IODP boreholes, seawater, and drilling mud at North Pond.	North Pond Microbes	bioproject_id
Ocean Crust Microbiome Amplicon Metadata	Metadata for sequence datasets used in ocean crust microbiome survey	Slow Life in Crust	SRA_Run, SRA_Study
OTU and Sequences	OTU and sequences	St. John LTREB, RUI-LTREB	Accession_number
Oyster Rocks CpG	Metagenomes from Delaware estuarine riverbank sediment.	Microbial CpG Methylation	ENA_ID
Particle Genomes	16S rRNA and genomes of particle associated taxa	MINTPOM	Accession_number
Peptide spectral counts (MetZyme 0.2)	Peptides and their spectral counts and precursor intensities from KM1128	MetZyme, HiCO2_AdaptCyano	protein_accession_num
Peru Margin iTAGs	Fungal iTAG analyses on Peru Margin sediment core samples	Fungal and prokaryotic activity in subseafloor	accession_num, accession_link
Peru Margin SAGs	Sub-seafloor single amplified genomes (SAGs) from anaerobic Peru Margin sediment.	Chloroflexi in deep sea sediments	accession_link, BioProject_ID, accession_num, BioProject_link
phagotrophic protist accession numbers	Links to GenBank accession numbers for 18S rDNA	Feeding responses of marine protists	accession_number
Phytoflux_BATS	BATS phytoplankton and cyanobacteria DGGE DNA data	Plankton particle flux	accession_number_1, accession_number_2
Phytoflux_BATS - Clone Library 2008-1010	Phytoplankton clone library matches from BATS cruises 2008-2010	Plankton particle flux	acc_cl_cult_match, accession_number, acc_closest_match
picoeukaryote accession numbers	Links to Accessions for 18S rDNA , chloroplast and metagenomics data	PHYTO_GENOME	Accession_Number_Series, Accession_Number_Link
planktonic ciliates: DNA accessions	Planktonic ciliate DNA sequence accession numbers at NCBI GenBank	CiliateSequencing	NCBI_accession
poly-A mRNA	The eukaryotic (poly-A) metatranscriptome for Canterbury Basin	Fungal and prokaryotic activity in subseafloor	accession_num, accession_link
Polychaete DNA sequences	DNA sequence data deposited on GenBank for polychaetes used in the project studying the evolution and mechanics of burrowing.	Burrowing polychaete mechanics	accession_number
Presence and absence of iron and light-related functional genes	Protein information obtained from samples collected on LMG1411.	Polar_Transcriptomes	KO_num, accession_link
ProteOMZ Exclusive Peptide Level Spectral Counts		ProteOMZ (Proteomics in an Oxygen Minimum Zone), MM Saito	blast_best_hit_taxon_id, KO, Combo_KO, Combo_EC, blast_accession
ProteOMZ Protein Level Spectral Counts	Total spectral count of proteins from R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific in 2016.	ProteOMZ (Proteomics in an Oxygen Minimum Zone)	pfams_id, uniprot_id, enzyme_comm_id, protein_name, kegg_id
Pro_ancestor	Clones of Prochlorococcus MIT9312 and link to BioProject	P-ExpEv	NCBI_BioProject
Pseudo-nitzschia amplicon sequence variants (ASVs)	Pseudo-nitzschia asv	C-AIM	NCBI_GenBank_Accession_Number
Raw LC-MS/MS	Raw LC-MS/MS data with list of identified peptides in xml format.	Proteomic profiling of Mariprofundus ferrooxydans	PRIDE_project
Raw LC-MS/MS and DNA	Raw LC-MS/MS data, with list of identified peptides, and DNA sequences.	Proteomic profiling of Mariprofundus ferrooxydans	identifier
Raw metagenome and metatranscriptome from an Fe mat at Loihi Seamount	Sample accession numbers for raw metagenome and metatranscriptome Illumina HiSeq 2500 sequencing from an Fe mat at Loihi Seamount	Ecology of Vent Mats	accession_id
reconstructed genomes	Reconstructed genomes from North Pond	North Pond Microbes	bioproject_id, BioSample
Reef biogeochemistry, metabolomics, and metagenomics	Reef biogeochemistry, metabolomics, and metagenomics	Coral Exometabolomes	Project_Accession
Reef Fish Genetic Accessions 2019	Hawaiian Reef Fish Genetic Accessions	Hawaiian Fish Origins	Genbank_Accession_Range
RNA sequence accessions at NCBI		Kleptoplasty	SRA_Study, BioProject, BioSample
RNA sequences	NCBI RNA accessions for multi-stressor conditions of polar fishes	polar_fish_adapt	NCBI_accession
Ross Sea metaproteome protein spectral counts		CORSACS	kegg_id, pfams_id, uniprot_id
Ross Sea sequences	Ross Sea sequences link	TRACERS	NCBI_accession
Ruergeria pomeroyi DSS-3 replete proteome	Ruergeria pomeroyi DSS-3 replete proteome	C-CoMP Model Bacteria	ncbi_id
Salp genome and transcriptome	Antarctic salp genome and RNAseq transcriptome	Salp_Antarctic	BioSample_accession, SRA_accession
Sample Accession Numbers	Project accession and library information on each experimental sample	Upwelled Phytoplankton Dynamics	bioproject_accession
Sample locations of neustonic nudibranch Glaucus spp.	Location data for genetic samples of nudibranch Glaucus atlanticus from global gyre systems	Neuston Phylogeny	accession_num
Samples Sequenced for Metabarcoding	Cyanobacterial and diatom samples sequenced for metabarcoding	Tango in the Mat World	NCBI_BioProject
Sanger Sequencing Analysis of Potexvirus PCR Products (Potex-5 and Potex-2RC)	Sanger sequences Potex-5/Potex-2RC PCR products	VIDA Seagrass	Genbank_accession
Santa Monica Bay 18S-V4 sequencing		SPOT	Accession
Sargasso Sea surface bacteria accession numbers	Paired metagenomic and metatranscriptomic data from 2 cruises in the spring of 2010 and the summer of 2010 in the Sargasso Sea	Active bacteria in surface waters	accession_number
SCTLD rapid microbiome characterization	SCTLD microbiome	Multi-Species Coral Disease	NCBI_BioProject_accession_number, NCBI_BioSample_accession_number
Sea star specimen information: California Academy of Sciences	Sea star specimen information from the California Academy of Sciences	Sea Star Microbiology	GenBankNum
Seawater data and site descriptions	Site descriptions and physical environmental conditions of reefs where sampling occurred.	Coral Microbial Relationships	accession_links_text, accession_numbers, accession_links
sea_fan_parasite_sequences	Accession numbers for Labyrinthulomycetes detected in sea fans	Climate_CoralDisease	accession_number
sea_fan_sequences	Accession numbers for Gorgonia ventalina (sea fan) sequencing data	Climate_CoralDisease	accession_number
Sediment Bacteria Accession Numbers	Lake surface sediment and submarine canyon sediment bacterial V1-V3 iTag sequence libraries.	Buried Alive	accession
Sedtrap Metagenomes	Marine sediment trap metagenomes	C-MORE	BioProject, SRX, BioSample
Seep Sediment Metagenome ANM1 - Genbank BioSample SAMN00215736	Seep Sediment Metagenome ANM1	Viruses in Methanotrophic Marine Ecosystems	Accession
sequence accession numbers	GenBank accession numbers for sequences from deep-sea protobranch bivalves.	Ev Deep Sea Molluscs II	Genbank_accession_number, accession_link
sequence accessions	Accession numbers for sequences generated from hydrothermal plume samples.	Guaymas plumes	accession_num
Sequence accessions: archaeal and bacterial clone libraries	Sequence accession numbers for archaeal and bacterial clone libraries from Guaymas Basin sediments	Microbial Biogeo Guaymas	popset_link, accession_num, popset_num, accession_link
Sequence data accession numbers from mesocosm experiments	Sequence data accession numbers originating from coral and coral mucus experiments.	Coral Microbial Relationships	accession_number, accession_number_text
sequence_accessions	Sequence accession numbers from microbialite mats.	Protists_Stromatolites	accession_number_range, link
Sequencing Reads	Accession numbers	KeysCoralPopgen	Accession
SERC 2019 viral dilution incubations	Gene copy number counts and 16S analyses of July 2019 Rhode River surface water incubated with or without viral dilution	identify cyano infections	Library_Accession_Number_16S
SERC time series	Water quality data, gene copy number counts, and 16S analyses from Rhode River samples collected at SERC	identify cyano infections	Library_Accession_Number_16S, Shotgun_Metagenome_Library_Accession_Number, Fusion_Amplicon_Accession_Numbers
SIMCO metatranscriptome sequence accessions	SIMCO metatranscriptome sequence accessions	SIMCO	SRA_Experiment, SRA_link_text
Single amplified genomes	Single amplified genomes (SAGs)	Dark ocean chemoautotrophs	IMG_Genome_ID
Single-cell genomics of Chloroflexi	Chloroflexi accessions	Subsurface FeOBs	NCBI_BioSample, NCBI_accession_number, IMG_taxon_id
Skeletal Organic Matrix Proteins	LC-MS/MS sequenced proteins extracted from Stylophora pistillata skeleton.	CROA	accession_number, accession_num_link
soxB Sequences	soxB gene sequence data from microbial mats at Axial Seamount, 2011.	AXIAL	accession_number_range, NCBI_PopSet_ID, NCBI_PopSet_link
Sponge holobiont accessions and metadata	Sponge holobiont accessions and metadata	DimensionsSponge	BioSample, BioProject
Sponge-Associated Microbial Communities (via 16S-V4 rRNA amplicon sequencing) Following Storm-Driven Flooding		Rapid Reefs Harvey	SRA, Accession
spp_barcodes	species barcodes and other genetic data	CMarZ_2004-2010	AccessNo
Substrate-specific metabolic responses of model marine bacteria	Substrate-specific metabolic responses of model marine bacteria - metadata for transcriptomic expression data	C-CoMP Model Bacteria	Accession
Substrate-specific metabolic responses of model marine bacteria using proteomics		C-CoMP Model Bacteria	SPO_ID_ACCESSION, KOfam_ACCESSION, KEGG_Module, Uniprot_accession
Subsurface Nitrospirota and Nitrospinota Origins		Slow Life in Crust	IMG_genome_id
Sulfitobacter phage accessions	Sulfitobacter phage accessions	Roseophage as a Model	accession_NCBI
Sup_Aug-10-carbon	Sup_Aug-10-carbon	Lake Superior Radiocarbon	Accession_Number
Symbiodiniaceae communities in corals with ITS-2 rDNA amplicon sequencing		Moorea Virus Project	SRA_Run, BioSample_Accession
Symbiont accession numbers	Accession numbers of symbiotic algae in coral	SymBioSys	Genbank_accession_num
Synechococcus accessions	Synechococcus accessions	Phytoplankton Community Responses	Accession
T. rotula Common Garden Experiment	T. rotula Common Garden Experiment	Phytoplankton Community Responses	Experiment_Accession
Tam genome analysis	Thermovibrio ammonificans HB1 genome manual curation	Deep Biosphere Energy Limitation	Accession
Thalassiosira Fe and light limitation - ENA accessions	ENA accessions for transcriptomes of T. oceanica and T. weissflogii grown in varied Fe and light	GeTFeHvCOdia	ENA_run_accession, ENA_study_accession, ENA_2nd_study_accession, sample, ENA_sample_accession, ENA_2nd_sample_accession, ENA_expt_accession
Thalassiosira Fe and light limitation - NCBI and iMicrobe accessions	NCBI and iMicrobe accessions for transcriptomes of T. oceanica and T. weissflogii grown in varied Fe and light	GeTFeHvCOdia	MMETSP_sample_id, iMicrobe_sample_accession, NCBI_BioSample_id, NCBI_study_accession, NCBI_BioProject_id, NCBI_SRA_id
Thaps microarrays - ISB	Microarrays for T. pseudonana diatoms grown in the laboratory under different conditions.	OA Diatom Response	GEO_accession
Thaumarchaea transcriptomes	Thaumarchaea transcriptomes	AmoA Archaea	Accession, Accession_text
Tidal study of seawater microbial communities		Coral Exometabolomes	NCBI_BioProject_accession_number, NCBI_BioSample_accession_number
Total spectral count of proteins (MetZyme 0.2)	Global metaproteomic dataset for KM1128 the METZYME expedition.	MetZyme	uniprot, PFams, KO, EC
Transcription in marine bacteria	Transcripts in four cultivated marine bacteria	EAGER Respiration	Genbank Accession Number
Transcriptomic response of Emiliania huxleyi to HHQ	Transcriptomic response of Emiliania huxleyi to HHQ	HHQSignals	series_accession, biosample_accession, biosample_link
Trichodesmium AHL metatranscriptomes_AE1409	GenBank Trichodesmium accessions and associated metadata	P Processing by Tricho	bioproject_accession, biosample_accession
Trichodesmium consortia FASTq accessions	NCBI accession numbers for raw RNA-seq fastq files derived from laboratory-maintained Trichodesmium erythraeum cultures	HiCO2_AdaptCyano, TriCoLim	SRA, GSM, BioSample
Trichodesmium consortia metagenomics	16S tag data, metagenomic data, and a draft assembled genome of Altermonas macleodii derived from laboratory-maintained Trichodesmium erythraeum cultures	HiCO2_AdaptCyano	accession_number, accession_link, BioProject_id, BioProject_link
Trichodesmium field metaproteomes - protein spectral counts		Cyanobacteria Warming Responses, TriCoLim, MM Saito, MM Proteins and Organics Tech	uniprot_id
Trichodesmium sequence accessions	GenBank Trichodesmium accessions and associated metadata	P Processing by Tricho	bioproject_accession
V4 amplicon sequencing of coral tissue	Accession numbers and locations of species analyzed.	Coral Microbial Relationships	PB_V_accession, PB_V_accessionLink, PB_V_replicate_accession, UCT_CP_glass_accession, PB_V_replicate_accessionLink, UCT_CP_glass_accessionLink, UCT_CV_glass_accession, UCT_CP_glass_replicate_accession, UCT_CV_glass_accessionLink, UCT_CP_glass_replicate_accessionLink, UCT_CV_glass_replicate_accession, UCT_CV_garnet_accession, UCT_CV_glass_replicate_accessionLink, UCT_CV_garnet_accessionLink, UCT_CV_garnet_replicate_accession, UCT_CV_garnet_replicate_accessionLink
V4 SSU rRNA gene primer validation for reef seawater	Partial SSU rRNA genes of bacteria and archaea from reef seawater samples produced using 515F/806R and 515F/806RB primers	Coral Microbial Relationships	primr_806R, primr_806RB
Vent_CSP_SAG	Single amplified genomes (SAGs) of microbial cells isolated from Crab Spa, East Pacific Rise	Microbial Communities at Deep-Sea Vents	accession_IMG, GOLD_Analysis_project_id
Vouchered specimens	Vouchered specimens	Costa Rica Seeps	genBankAccessionNumber
Weekly Surface Water Samples	Weekly Surface Water Samples	Biological C:N:P ratios	JGI_Project_Name, JGI_Sequencing_Project_ID, JGI_Library_Name, JGI_Project_ID
Whole community metatranscriptomes	Whole community (3 domain) metatranscriptomes for Peru Margin and Canterbury Basin subsurface sediment core samples	Fungal and prokaryotic activity in subseafloor	accession_num, accession_link
Whole genome sequence accessions from Ammonia-Oxidizing Archaea (AOA)	Whole genome sequence accessions from Ammonia-Oxidizing Arachae (AOA)	N-Cycling Microbial Communities	Draft_Genome_Accession, SRA_Accession
WS1209 strains	Microbial culture collection, strain IDs, locations and depth from cruise WB1209	CEMSB	GenBank_accession

Programs associated with this parameter

None

Status message

Database

Contribute Data

Parameter: accession number