Parameter: NCBI SRA run accession (SRR)

Short Description:

NCBI SRA run accession (SRR)

Short Name:

SRA_run

Official Name:

SRA_run

Description

The National Center for Biotechnology Information (NCBI) Run accession in the Sequence Read Archive (SRA).

Results are called runs in the SRA. Runs comprise the data gathered for a sample or sample bundle and refer to a defining experiment.

A Run is an object that contains actual sequencing data for a particular sequencing experiment. Experiments may contain many Runs depending on the number of sequencing instrument runs that were needed.

This identifier usually begins with SRR

Datasets associated with this parameter

Dataset Name	Brief Description	Project	PI-Supplied Parameter Name
16S V4 rRNA gene tag sequences from reef seawater	16S V4 rRNA gene tag sequences from reef seawater	Quantitative coral microbiomes	SRA_Run_ID
18s DNA sequences of potential prey of siphonophores		SiphWeb	Run
Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022	Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022	Resilient Acerv, Coral Rickettsiales	SRA_Run
Acropora cervicornis bleaching sequences	Acropora cervicornis bleaching sequences	Coral Rickettsiales	SRA_run_ID
Experimental coral treatments	DNA results of Pocillopora cf. meandrina and Acropora hyacinthus	Moorea Virus Project	SRA_accession
Gulf of Alaska copepods: annotated transcriptomes	The dataset includes the annotation files of nine high-quality de novo transcriptomes generated from shotgun assemblies of short-sequence reads.	Diapause preparation, Neocalanus Gulf of Alaska	SRA_Accession
Kāneʻohe Bay Time-series - microbial community	Kāneʻohe Bay Time-series - microbial community	Pelagibacteromics	SRA_accession
Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry	Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry	Pelagibacteromics	Amplicon_SRA_accession, Metagenome_SRA_accession
Kelletia kelletii: DNA and RNA sequence	Kelletia kelletii: DNA and RNA sequence	KW connectivity	Run
Long-term diatom microbiome data and analysis package		LTPE	Run
Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities	Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities	frenemies	RUN
Microbial 16S rRNA gene amplicon SRA numbers	Microbial 16S rRNA gene amplicon SRA numbers	DeepCCZ	SRA_run_ID
Microorganisms associated with pyrosomes	16S rRNA sequencing pyrosome-associated microorganisms	Gelatinous Grazer Feeding	sra_run_accession
Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female	Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female	Neocalanus Gulf of Alaska, Diapause preparation	SRA_Run_Accession
NCBI accessions for RNAseq data from apparently healthy and SCTLD-affected Montastraea cavernosa		Multi-Species Coral Disease	NCBI_SRA_accession
Northern California Current Microorganisms	16S rRNA gene of microorganisms	Gelatinous Grazer Feeding	sra_run_accession
OC1703A Sediment 16S rRNA and 16S rRNA gene amplicon sequences	OC1703A Sediment 16S rRNA and 16S rRNA gene amplicon sequences	Deep Sediment N Fix	SRA_run_ID
OC1703A Sediment MG-MT	OC1703A Sediment MG-MT	Deep Sediment N Fix	SRA_run_ID, SRA_run_link
Pocillopora sequences from 2019		Pocilloporid Coral Diversity	Run
Pooled sequencing data from field-collected Eurytemora affinis		Evolutionary genomics of a copepod	Run
RADseq data from Atlantic silversides used for linkage and QTL mapping		GenomAdapt	SRA_run_accession
Salp and pteropod associated microorganisms	16S rRNA sequencing salp and pteropod microorganisms	Gelatinous Grazer Feeding	sra_run_accession
Seagrass Microbiome Data		Eelgrass disease	Run
Sinking particle sample information for BATS microbial communities		Marine Plankton Aggregation	SRA_run_ID
SSU rRNA Gene Sequencing from SPOT	SSU rRNA Gene Sequencing from SPOT	SPOT	run_accession
Viral Consortia in Stony Corals	Viral Consortia in Stony Corals	Multi-Species Coral Disease	SRA_Run
Wild copepod pool-seq data	Pool-seq data from wild populations of copepods in the North Sea	Evolutionary genomics of a copepod	SRA_Run

Programs associated with this parameter

None

Status message

Database

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Parameter: NCBI SRA run accession (SRR)