Parameter: NCBI BioSample accession

Short Description:

NCBI BioSample accession

Short Name:

BioSample

Official Name:

BioSample

Description

The National Center for Biotechnology Information (NCBI) BioSample accession number in the BioSample database.

The BioSample database stores descriptive information about the physical biological materials used to generate data submitted to NCBI's primary data archives. Typical examples of a BioSample include a cell line, a tissue biopsy or an environmental isolate. The BioSample database promotes the use of structured and consistent attribute names and values to describe sample properties and provenance. BioSample records are reciprocally linked to data derived from that sample and to the BioProjects in which they participate.

This identifier usually begins with SAMN

Datasets associated with this parameter

Dataset Name	Brief Description	Project	PI-Supplied Parameter Name
18s DNA sequence of potential prey of siphonophores		SiphWeb	BioSample
Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022	Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022	Coral Rickettsiales, Resilient Acerv	BioSample
Atlantic silverside RNA-seq reads		GenomAdapt	BioSample
Bacterial communities and relative abundances of the pathogen Vibrio coralliilyticus in feces of coral reef fish	Bacterial communities and relative abundances of the pathogen Vibrio coralliilyticus in feces of coral reef fish	Fish transmit microbes	BioSample
Brothers Volcano Metagenome-Assembled Genome Accession Numbers	Brothers Volcano Metagenome-Assembled Genome Accession Numbers	Brothers Volcano Microbiology	Biosample_accession
Ca. Aquarickettsia rohweri transcriptomes		Coral Rickettsiales	BioSample_Accession
Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3	picoeukaryote Micromonas commoda	CC_Auto_Hetero_Fluxes	Accession
Evolve and re-sequence experiment - laboratory selection lines	Evolve and re-sequence experiment - laboratory selection lines	Evolutionary genomics of a copepod	BioSample
Evolve and re-sequence experiment - wild populations	Evolve and re-sequence experiment - wild populations	Evolutionary genomics of a copepod	BioSample
Experimental coral treatments	DNA results of Pocillopora cf. meandrina and Acropora hyacinthus	Moorea Virus Project	BioSample
Gene expression of Eurytemora affinis (saline and freshwater)		Evolutionary genomics of a copepod	BioSample
Gulf of Alaska copepods: annotated transcriptomes	The dataset includes the annotation files of nine high-quality de novo transcriptomes generated from shotgun assemblies of short-sequence reads.	Diapause preparation, Neocalanus Gulf of Alaska	BioSample
IRN-BRU MV1405 Transect 5 BioGeoChem		DiatomFeMolBio, iron limitation mosaic	BIOSAMPLE_ACCESSION
Juan de Fuca Viruses	Single Amplified Virus Genome sequence accessions at NCBI	Juan de Fuca Viruses	BioSample
Kāneʻohe Bay Time-series - microbial community	Kāneʻohe Bay Time-series - microbial community	Pelagibacteromics	biosample_accession
Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry	Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry	Pelagibacteromics	biosample_accession
Long-term diatom microbiome data and analysis package		LTPE	BioSample
Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities	Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities	frenemies	BIOSAMPLE
Microbiome dynamics of coral reef and cleanerfish	Microbiome dynamics of coral reef and cleanerfish	Cleanerfish microbiomes	BioSample_accession
Microorganisms associated with doliolids	16S rRNA sequencing doliolids associated microorganisms	Gelatinous Grazer Feeding	biosample_accession
Microorganisms associated with pyrosomes	16S rRNA sequencing pyrosome-associated microorganisms	Gelatinous Grazer Feeding	biosample_accession
Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female	Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female	Diapause preparation, Neocalanus Gulf of Alaska	BioSample
NCBI accession numbers for RNAseq data from five coral species experimentally exposed to SCTLD	NCBI accession numbers for RNAseq data from five coral species experimentally exposed to SCTLD	Multi-Species Coral Disease	Biosample_Accession
NCBI accession numbers for S. arcuata and S. meunieri	NCBI accession numbers for S. arcuata and S. meunieri	Ciliate Omics	Sample_Accession
Northern California Current Microorganisms	16S rRNA gene of microorganisms	Gelatinous Grazer Feeding	biosample_accession
OC1703A Sediment 16S rRNA and 16S rRNA gene amplicon sequences	OC1703A Sediment 16S rRNA and 16S rRNA gene amplicon sequences	Deep Sediment N Fix	BioSample
OC1703A Sediment MG-MT	OC1703A Sediment MG-MT	Deep Sediment N Fix	BioSample
OC1703A Sediment nifH amplicon sequences	OC1703A Sediment nifH amplicon sequences	Deep Sediment N Fix	BioSample
Pocillopora sequences from 2019		Pocilloporid Coral Diversity	BioSample
Pooled sequencing data from field-collected Eurytemora affinis		Evolutionary genomics of a copepod	BioSample
Pseudo-nitzschia spp. presence-absence and environmental data		NES LTER, NBPTS, C-AIM	NCBI_BioSample
RADseq data from Atlantic silversides used for linkage and QTL mapping		GenomAdapt	biosample_accession
Raw low-coverage whole genome sequencing reads		GenomAdapt	biosample_accession
Reef biogeochemistry, metabolomics, and metagenomics	Reef biogeochemistry, metabolomics, and metagenomics	Coral Exometabolomes	biosample_accession
Salp and pteropod associated microorganisms	16S rRNA sequencing salp and pteropod microorganisms	Gelatinous Grazer Feeding	biosample_accession
Santa Monica Bay 18S-V4 sequencing		SPOT	BioSample
Seagrass Microbiome Data		Eelgrass disease	BioSample
Sinking particle sample information for BATS microbial communities		Marine Plankton Aggregation	biosample_accession
Sponge Symbiont Carbon and Nutrient Cycling	Sponge Symbiont Carbon and Nutrient Cycling	Sponge_Loop	BioSample
SSU rRNA Gene Sequencing from SPOT	SSU rRNA Gene Sequencing from SPOT	SPOT	sample_accession, secondary_sample_accession
Three-Prime Tag-Sequencing (3' Tag-Seq) Data for Pisaster ochraceus		PoGOMO	bioproject_accession
USVI Time-series	USVI Time-series	Coral Chorus	BioSample_accession
Weekly Surface Water Samples		Biological C:N:P ratios	NCBI_BioSample
Whole genome sequence data for Pisaster ochraceus		PoGOMO	bioproject_accession
Wild copepod pool-seq data	Pool-seq data from wild populations of copepods in the North Sea	Evolutionary genomics of a copepod	BioSample

Programs associated with this parameter

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Parameter: NCBI BioSample accession