Parameter: sampling_method

Short Description:

sampling_method

Short Name:

sampling_method

Official Name:

sampling_method

Units:

dimensionless

Graphable:

Yes

No Data Value:

Description

Method used to collect sample.

Datasets associated with this parameter

Dataset Name	Brief Description	Project	PI-Supplied Parameter Name
16S V4 rRNA gene tag sequences from reef seawater	16S V4 rRNA gene tag sequences from reef seawater	Quantitative coral microbiomes	LibraryLayout, LibrarySelection, LibrarySource, samp_mat_process
Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022	Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022	Coral Rickettsiales, Resilient Acerv	Library_Strategy, Library_Selection, Library_Layout, Design
Acropora cervicornis bleaching sequences	Acropora cervicornis bleaching sequences	Coral Rickettsiales	library_selection, library_layout
Algal Habitat Coverage	Algal Habitat Coverage	Urchin metapopulations	SurveyType
Alteromonas ancestor	Clones of Prochlorococcus MIT9312 and link to BioProject	P-ExpEv	design_description
Asteroids and Holothurians - Table 1 - Asteroid species - Presence 1 and absence 0 of Asteroid species by station	Asteroids and Holothurians - Table 1 - Asteroid species - Presence (1) and absence (0) of Asteroid species by station	Deep Sea Benthic Dynamics	Gear
Asteroids and Holothurians - Table 2 - Holothurian species - Number of individuals by station	Asteroids and Holothurians - Table 2 - Holothurian species - Number of individuals by station	Deep Sea Benthic Dynamics	Gear
AT26-15: Alvin dive event log	Jason sample event log, cruise AT21-02, June 2012	SEEPC	sampling_method
BASIN 2019 Benthic Fluxes	BASIN 2019 Benthic Fluxes	BASIN	Type_of_Incubation, Chamber_Volume_Determination
biological samples	Cs134, Cs137, Ag110m, and K40 in zooplankton and small fish	Fukushima Radionuclide Levels	sampling_method
Bivalves - Table 3 - Bivalve species - Information on sampling stations from the North American Basin	Bivalves - Table 3 - Bivalve species - Presence 1 and absence 0 of Bivalve species from the North American Basin	Deep Sea Benthic Dynamics	GEAR
Bivalves - Table 4 - Bivalve species - Information on sampling stations from the Western European Basin	Bivalves - Table 4 - Bivalve species - Information on sampling stations from the Western European Basin	Deep Sea Benthic Dynamics	GEAR
BOWLS sample log	Sample log for specimens collected for genomics analyses	BOWLS	genomic_method
Brothers Volcano Metagenome-Assembled Genome Accession Numbers	Brothers Volcano Metagenome-Assembled Genome Accession Numbers	Brothers Volcano Microbiology	Assembly_program, Binning_program
BWLD-C7 subsurface microbes	BWLD-C7 subsurface microbes	Virus-host anoxic sediment	design_description
Carbonate Chemistry 2014-2017 and 2018-2020	Carbonate chemistry in Mission Aransas Estuary (2014-2017, 2018-2020)	CO2 Flux and Acidification in Subtropical Estuaries	pH_Label
Chemosynthetic biofilm diversity	Samples sequenced from chemosynthetic biofilm communities from deep-sea hydrothermal vents	Microbial Communities at Deep-Sea Vents	collection_method
Classified particle images	Images and associated metadata of individually classified particles imaged and quantified in sediment trap gel layers	EAGER DNA BioPump	Type
Coccolithophore birefringence from polarized microscopy		Cocco-Mix	Gear
Comparison of abundance-based growth rate predictions	Comparison of abundance-based growth rate predictions	Planktonic Herbivore Temp Dependence	Equation_applied
Data for ambient concentrations of three DOC compounds (acetate, glycerol, mannitol)		Cocco-Mix	Gear
Delaware Bay Oyster Samples	Delaware Bay oyster archived tissues	SEGO	method
Diurnal gnathiid consumption		Gnathiid isopod ecology	Method
DOPv2021	DOP concentration observations in the global ocean between 1990 and 2021.	DOP N2 fixation and export production	method
Edge effects and fragmentation literature review	Edge effects and fragmentation literature review	Habitat Fragmentation	collected
EN616 CTD hydrography		Cocco-Mix	Gear
Epibenthic community taxonomy	Epibenthic community taxonomic hierarchy and sampling method in Aleutian Island kelp forests, 2016-2017	Kelp Forest Ecosystem Engineer Loss	Sampling_method
ESP 2016 Seq	Metagenomic, metatranscriptomic, and single cell sequencing data from the Fall 2016 ESP deployment in Monterey Bay, CA	OceanSulfurFluxBact	Assembly_Method
Extracellular reef seawater metabolites from the Jardines de la Reina reef-system		Coral Exometabolomes, RAPID Mass Spec for Dispersants	Profiling_mode, Ion_mode
Fish observations	Fish observations corresponding to one observation of a fish or group of conspecific fish.	Goby size-selection	method
Fish roadside surveys 2014-2015	Weekly survey of fish sold by the roadside in Moorea, French Polynesia, 2014-2015	Coral reef fishery	gear_1, gear_2, gear_3
FlowCAM imaging cytometer data from EN616 cruise		Cocco-Mix	Gear
Global Bleaching and Environmental Data	Bleaching and environmental data for global coral reef sites from 1980-2020	Coral Reef Brightspots	Data_Source
GN01 Element quotas of individual phytoplankton cells	GN01 Element quotas of individual phytoplankton cells	Arctic GEOTRACES bottle particles, U.S. GEOTRACES Arctic	GridType
HADES-K - Specify Export 201305190833 Final	HADES-K - Specify Export 201305190833 Final	HADES	Gear
HPLC pigment data collected during the Tara Pacific expedition	HPLC pigment data collected during the Tara Pacific expedition	Island Mass Effect	Sampling_protocol, Method_or_Device
Illumina Sequences		SedimentaryIronCycle	sequencing_and_analysis_methods, Analysis_methods
Initial prey abundance and biomass: MEPS 2017	Initial prey abundance and biomass: MEPS 2017	EAGER: Copepod nauplii	prey_quant_method
Invertebrate Species Counts	Invertebrate Species Counts	Urchin metapopulations	SurveyType
Isolates	Isolates from Mariana and Kermadec trenches, 2014	Mariana Perspectives	Collection_method
Jason-II sample log AT26-10	sample log from Jason-II dives for Sievert	Microbial Communities at Deep-Sea Vents	collection_method
JeDI	Jellyfish Database Initiative: Global records on gelatinous zooplankton for the past 200 years	Trophic BATS	collection_method
MBRS coral survey 2014	MBRS coral survey	Thermal History and Coral Growth	method
Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities	Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities	frenemies	LIBRARY_SELECTION
metatranscriptomics - Niskin vs. in situ	Microbial metatranscriptomics: Niskin vs. in situ sampler	Pickled Protists	sampling_method
metatranscriptomics - upper_lower halocline	Microbial metatranscriptomics: upper and lower halocline water column	Pickled Protists	sampling_method
Microbial 16S rRNA gene amplicon SRA numbers	Microbial 16S rRNA gene amplicon SRA numbers	DeepCCZ	design_description
Microbial eukaryotic diversity: Axial Seamount SRA	Axial seamount SRA	Microbial eukaryotes at hydrothermal vents	source_material_id
Microbial eukaryotic diversity: Gorda Ridge SRA	Gorda Ridge SRA	Microbial eukaryotes at hydrothermal vents	samp_collect_device, source_material_id
Mid-Atlantic Bight Continuous Plankton Recorder 2014-2017	Mid-Atlantic Bight Continuous Plankton Recorder 2014-2017	WARMEM	measurement_stage
Mitochondrial COI barcode sequencing data for Gigantidas childressi veligers, pediveligers, and juveniles	Mitochondrial COI barcode sequencing data for Gigantidas childressi veligers, pediveligers, and juveniles	SALT	Collection_Method
MOC stations	Guaymas Basin vent field MOCNESS tow station list	Vent Benthos	tow_type
Moorea lagoon bleaching		Fish Derived Coral Nutrients	SURVEY_TYPE
Multi-core Arctic sediment data	Sediment geochemical and microbial activity data collected by multi-corer.	ESAS Water Column Methane	collection_type
Naupliar ingestion: MEPS 2017	Naupliar grazing by Parvocalanus crassirostris and Bestilina similis nauplii (uncorrected rates)	EAGER: Copepod nauplii	prey_quant_method
Noble gas isotope data from Oregon and Arizona groundwater	Noble gas isotope data from Oregon and Arizona groundwater	HPNGI	NG_method
OC1703A Sediment 16S rRNA and 16S rRNA gene amplicon sequences	OC1703A Sediment 16S rRNA and 16S rRNA gene amplicon sequences	Deep Sediment N Fix	library_selection, library_layout, design_description, library_strategy, library_source
OC1703A Sediment MG-MT	OC1703A Sediment MG-MT	Deep Sediment N Fix	library_strategy, library_source, library_selection, library_layout, design_description
OC1703A Sediment nifH amplicon sequences	OC1703A Sediment nifH amplicon sequences	Deep Sediment N Fix	Sequencing_method, Library_selection, Assay_Type, Library_layout
Ocean Crust Microbiome Amplicon Metadata	Metadata for sequence datasets used in ocean crust microbiome survey	Slow Life in Crust	Primers, DNAextraction
Pseudo-nitzschia amplicon sequence variants (ASVs)	Pseudo-nitzschia asv	C-AIM	ID_Method
Sample Accession Numbers	Project accession and library information on each experimental sample	Upwelled Phytoplankton Dynamics	library_selection, library_layout, library_strategy, library_source
SCTLD rapid microbiome characterization	SCTLD microbiome	Multi-Species Coral Disease	Sequencing_Strategy, Sequencing_strategy_details, sample_type, DNA_extraction_method
seal_and_prey_fatty_acids	Fatty acid signature profiles of harbor seals and prey species (raw FID data).	Seal_response_to_prey	prep_method
Sequence accessions: archaeal and bacterial clone libraries	Sequence accession numbers for archaeal and bacterial clone libraries from Guaymas Basin sediments	Microbial Biogeo Guaymas	method
Shell thickness of mussel recruits	Shell thickness of mussel recruits	Coastal Adaptation	Magnification
Single cell mass spec Cell-Cell interaction		Creatine Cycling	Ion_Mode
Single cell mass spec lipid double bonds		Creatine Cycling	Ion_Mode
Single-cell genomics of Chloroflexi	Chloroflexi accessions	Subsurface FeOBs	service
SMURF faunal settlement		Habitat Fragmentation	Gear
Species Sizes	Species Sizes	Urchin metapopulations	SurveyType
Spring 2011 - Drill Core Methane	Spring 2011 - Drill Core Methane	East Siberian Arctic Shelf	Collection_Type
Spring 2011 - Master Data Sheet	Spring 2011 Sediment/Permafrost Master Data Sheet	East Siberian Arctic Shelf	Collection_Type
Spring 2012 - d13C and d2H Stable Isotope Composition	Spring 2012 - d13C and d2H Stable Isotope Composition	East Siberian Arctic Shelf	Collection_Type
Spring 2012 - Master Data Sheet	2012 Arctic Sediment/Permafrost Master	East Siberian Arctic Shelf	Collection_Type
Spring 2012 - Sediment Gas Concentrations	Spring 2012 - Sediment Gas Concentrations	East Siberian Arctic Shelf	Collection_Type
Spring 2012 - Turnover Rates	Spring 2012 - Turnover Rates	East Siberian Arctic Shelf	Collection_Type
SSU rRNA Gene Sequencing from SPOT	SSU rRNA Gene Sequencing from SPOT	SPOT	library_layout, library_strategy, library_source, library_selection
STING I and STING II extracted chlorophyll a and pheophytin	Chlorphyll a and pheophytin from two cruises performed as part of the STING project	Gulf of Mexico DON and Fe	Collection
Substrate Coverage	Substrate Coverage	Urchin metapopulations	SurveyType
Survey Quadrats: organism sizes	Survey counts and sizes	Oyster Reef Reversal	oyster_sizes
Trench CFUs	CFUs from Mariana and Kermadec trenches, 2014	Mariana Perspectives	Collection_method
V3-V4 16S rRNA sequence accessions from whole larvae and juveniles of Gigantidas childressi and co-located water samples	V3-V4 16S rRNA sequence accessions from whole larvae and juveniles of Gigantidas childressi and co-located water samples	SALT	Collection_Method
Vent_CSP_SAG	Single amplified genomes (SAGs) of microbial cells isolated from Crab Spa, East Pacific Rise	Microbial Communities at Deep-Sea Vents	GOLD_sequencing_strategy

Programs associated with this parameter

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Parameter: sampling_method