Parameter: taxon_code

Short Description:

taxon_code

Short Name:

taxon_code

Official Name:

taxon_code

Graphable:

Yes

Description

taxonomic group or entity code, such as the ten digit number from the NODC Taxonomic List, v. 8.

Datasets associated with this parameter

Dataset Name	Brief Description	Project	PI-Supplied Parameter Name
16S and 18S rRNA gene amplicon sequences	16S and 18S rRNA gene amplicon sequences	HHQSignals	tax_ID
Abalone and Urchin Recruitment Modules	Abalone and Urchin Recruitment Modules	Urchin metapopulations	SpeciesID
All taxa colonization counts	EPR colonizer counts	Larval supply at EPR vents, EPR Functional Diversity	scientificNameID, AphiaID
Allometric scaling of calcification for Mytilus californianus		OA decoupling	AphiaID
all_species_seen	All the species seen during broad-scale cruises from the US-GLOBEC Georges Bank Program.	GB	taxon_code
anemone observations log	anemone log	Reef Fish Resilience	anem_spp
artificial and transplant reef census	2010 census data at artificial and transplant reefs at Lee Stocking Island, Bahamas.	Lionfish Invasion	species_code
Atlantic silverside RNA-seq reads		GenomAdapt	taxonomy_id
Bacterial communities and relative abundances of the pathogen Vibrio coralliilyticus in feces of coral reef fish	Bacterial communities and relative abundances of the pathogen Vibrio coralliilyticus in feces of coral reef fish	Fish transmit microbes	host_AphiaID
Bag Seine Catch Data	Monthly bag seine catch data of vertebrates and invertebrates from bays along the Texas coast from 1982 to 2016	Texas Coastal Fish	species_code
Belize core data	MBRS coral core data	Thermal History and Coral Growth	species, species_code
benthic invert codes	Benthic invertebrate taxonomy, species and codes - St. John USVI survey 1988-2007	St. John LTREB	species_code
BioLog Eco-plates experiment - 14C-labeled uptake	BioLog Eco-plates experiment - 14C-labeled uptake	Cocco-Mix	CCMP_code
BioLog Eco-plates experiment - Metabolic potential	BioLog Eco-plates experiment - Metabolic potential	Cocco-Mix	Strain_code
Clam Outplants	Clam outplants in Seadrift and Bolinas Lagoon for 2015	Invasive_predator_harvest	species_code
clownfish log	clownfish log	Reef Fish Resilience	fish_spp
Cocos Ridge C14 Data	Radiocarbon (C14) calendar ages measured on pelagic foraminifera species	CDISP 2021	AphiaID
codes: species and dive types	data codes	Reef Fish Resilience	Code
Composition of experimental marine invertebrate communities across latitude	Composition of experimental marine invertebrate communities across latitude	Competition and Predation across Latitude	Taxa_num
Composition of marine invertebrate communities across latitude with exposure to predation		Competition and Predation across Latitude	Taxa_num
Control incubation data during calcification experiments		OA decoupling	AphiaID
Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3	picoeukaryote Micromonas commoda	CC_Auto_Hetero_Fluxes	Taxonomy_ID
Coral health survey	Coral health survey, Guam 2014	Reef Resilience in Guam	taxon_code
Cross Bay Demographics	Demographic data for introduced crab from multiple bays 2009-2016	Invasive_predator_harvest	species_code
Deep-sea larvae for microbiome study	Deep-sea larvae for microbiome study	Metacommunity Dynamics, EPR Functional Diversity, Mariana Back-arc Vents	scientificNameID
EPR vent colonists functional traits		EPR Functional Diversity	scientificNameID, AphiaID
fairy basslet counts post-invasion	Counts of fairy basslet on Bahamian reefs after invasion by red lionfish.	Lionfish Invasion	species_code
Field measurements of periostracum cover from focal population		OA decoupling	AphiaID
Fish and Invertebrate Transects		Reef Fish Resilience	Species
Fish species code key	Fish species code key	Larval Dispersal in Kelp Rockfish	pisco_classcode
fish species counts	Fish species counts in 3, 20x40 m transects, Panama (1980-2010)	EPac Corals 1982/82 El Nino: VII, EPac Corals 1982/82 El Nino: VI, EPac Corals 1982/83 El Nino: III, EPac Corals 1982/83 El Nino: II, EPac Corals 1982/83 El Nino: IV, EPac Corals 1982/82 El Nino: V, EPac Corals 1982/83 El Nino: I	species_code
Fish surveys 1999-2015	Fish surveys, 1999-2015	Larval Dispersal in Kelp Rockfish	classcode
Florida Keys coral growth	FKRT coral core data	Thermal History and Coral Growth	species
Fossil Seal Amino Acid Isotopes	C and N isotope data for individual amino acids from fossil seals from the western Ross Sea, Antarctica	Southern Ocean Pinnipeds	AphiaID
Fossil Seal Bulk Isotopes 14C	Location, weathering, bulk isotope, and 14C data for fossil seals from the western Ross Sea, Antarctica	Southern Ocean Pinnipeds	Taxon_field, Taxon_aDNA, Taxon_final
Gill Net Catch Data		Texas Coastal Fish	Species_Code
grouper-goby lab expt	Lab experiments to determine if groupers (Cephalopholis sp.) eat cleaner gobies (Elacatinus sp.).	Lionfish Invasion	goby1_species_code, goby2_species_code
Hydrothermal vent parasite species reported in published literature	Literature review of deep-sea hydrothermal vent parasite, egg predator, and micropredator species	Vent Settlement Cues, EPR Functional Diversity	PARASITE_SPECIES_AphiaID, HOST_SPECIES_AphiaID, HOST_SPECIES_LSID
Identity and Heights of Octocoral Species		Octocoral Community Dynamics	Species_code
Incubation data for Mytilus californianus calcification	Incubation data for Mytilus californianus calcification	OA decoupling	AphiaID
IntertidaI Transitions	IntertidaI Transitions	Experiments with an Exploited Kelp, Neutral Theory of Biodiversity, Regenerated Nitrogen, LTREB Ecological Dynamics	taxon_code
IntertidaI Transitions Mussel Removals	IntertidaI Transitions Mussel Removals	Experiments with an Exploited Kelp, Neutral Theory of Biodiversity, Regenerated Nitrogen, LTREB Ecological Dynamics	taxon_code
Invertebrate Species Counts	Invertebrate Species Counts	Urchin metapopulations	SpeciesID
inverts - pooled	Benthic invertebrates from 6 sites pooled, USVI: 1992-2007	St. John LTREB	L, W, B, M, X, C, N, Y, D, O, Z, E, P, AA, F, Q, AB, G, R, AC, H, S, AD, I, T, J, U, K, V, A
inverts - Tektite and Yawzi Pt	Benthic invertebrates from Tektite site, USVI: 1988-2007	St. John LTREB	N, Y, D, O, Z, E, P, AA, F, Q, AB, G, R, AC, H, S, AD, I, T, J, U, K, V, A, L, W, B, M, X, C
Juvenile oyster expt: non-oyster counts and sizes	Juvenile oyster expt: non-oyster spp. counts and sizes	Oyster Reef Reversal	species_code
Larval Sebastes Diet and Morphometric Data		RAPID Anchovy Response	Prey_Taxa_AphiaID, Species_AphiaID
lionfish cleaner bottle expt	Cleaner and host species observed on Bahamian reefs under varying experimental conditions	Lionfish Invasion	species_code_cleaner1, species_code_cleaner2, species_code_cleaner3, species_code_client
lionfish density effect on behavior	Lionfish behavior observed during study of effect of density on lionfish behavior.	Lionfish Invasion	prey_species_killed, prey_species_struck, prey_species_blew
lionfish density effects on native fish	Experiment testing for the effects of lionfish density on native fishes.	Lionfish Invasion	species_code
lionfish-goby lab expt	Lab experiments to determine if lionfish (Pterois volitans) eat cleaner gobies (Elacatinus sp.).	Lionfish Invasion	goby1_species_code, goby2_species_code
Macroalgal carbon and nitrogen content		High latitude kelp dynamics	Sp
Macroalgal growth and loss: plant retention		High latitude kelp dynamics	Sp
Macroalgal growth and loss: understory blade growth		High latitude kelp dynamics	Sp
Macroalgal production rates		High latitude kelp dynamics	Sp
Mariana Back-arc Macrofauna 2014	Macrofauna collected on colonization panels at Snail Vent Field on the Mariana Back-arc in 2014	Mariana Back-arc Vents	scientificNameID
Mark Recapture	Mark recapture data for introduced crab in Seadrift Lagoon 2011-2018	Invasive_predator_harvest	species_code
MBRS coral survey 2014	MBRS coral survey	Thermal History and Coral Growth	spp_code
MBRS Symbiodinium OTU	Symbiodinium OTU	Thermal History and Coral Growth	species_code
McMurdo epifauna species list		McMurdo Predator Prey, Antarctic Benthic Recovery, McMurdo Marine Benthos, SCINI	AphiaID
Microorganisms associated with doliolids	16S rRNA sequencing doliolids associated microorganisms	Gelatinous Grazer Feeding	organism_taxonomy_name, organism_taxonomy_id
Microorganisms associated with pyrosomes	16S rRNA sequencing pyrosome-associated microorganisms	Gelatinous Grazer Feeding	organism_taxonomy_id, organism_taxonomy_name
MOC zoop AK-LTOP	AK-LTOP MOCNESS tow zooplankton abundance/biomass	NEP	NODC_code
MOC1 zoop abund	MOCNESS-1 Plankton Abundances	NEP	nodc_code
Modeled thermal traits	PFT Thermal Response - Modeled thermal traits	Phytoplankton Community Responses	isolate_code
Modern Seal Amino Acid Isotopes	N isotope data for individual amino acids from modern west Antarctic seals	Southern Ocean Pinnipeds	AphiaID
Modern Seal Bulk Isotopes	C and N isotope data for seal tissues from west Antarctica	Southern Ocean Pinnipeds	AphiaID
Montagna-783256-BenthosSpecies	macrofauna species abundance	Hurricane Harvey Texas Lagoons	species_code
Monthly Trapping	Demographic data from introduced crab in Seadrift Lagoon 2009-2019	Invasive_predator_harvest	species_code
Mussel lab incubations: periostracum and pH (effect on shell dissolution)		OA decoupling	AphiaID
Neocalanus Multinet		Neocalanus Gulf of Alaska	APHIAID
NWACS CAMEO Database - Species	Species metadata associated with the NWACS CAMEO database	NW_AtlEcosysConnect	ITIS_num
OA and temp expt. - coral growth	OA and temp expt. - coral growth	Thermal History and Coral Growth	species_code
OA and temp expt. - survival		Thermal History and Coral Growth	species_code
Octocoral species abundances 2018	Octocoral species abundances 2018	Octocoral Community Dynamics	Species_code
Octocoral transects - species list	Octocoral species list	VI Octocorals, St. John LTREB	field_code
OTU table for 18S rRNA gene tag sequences from DNA and RNA		SPOT	OTU_ID
PAM fluorescence	Underwater fluorescence, Guam reefs 2014	Reef Resilience in Guam	taxon_code
Parasite taxonomic and life cycle information	Literature review metazoan parasite species	EPR Functional Diversity, Vent Settlement Cues	PARASITE_SPECIES_NAME_AphiaID
phytoplankton taxonomy	CARIACO time series Phytoplankton taxonomy from samples collected during CTD/Niskin casts	CARIACO	AphiaID
Plant biomass and foliar standing crop		High latitude kelp dynamics	Sp
Post-COVID Galapagos Megafauna Sizes	Body sizes of megafauna species at 6 sites after the 2020 COVID lockdown in Galapagos Islands	Galapagos diver disturbance	Species_Code
predator surveys Eleuthera	Size of predators observed during dedicated reef predator searches at Eleuthera, Bahamas.	Lionfish Invasion	species_code
predator surveys LSI	Predators observed at reefs near Lee Stocking Island, Bahamas	Lionfish Invasion	species_code
ProteOMZ Exclusive Peptide Level Spectral Counts		ProteOMZ (Proteomics in an Oxygen Minimum Zone), MM Saito	LCA_taxon
Radiolabeled DOC kinetic and pulse-chase experiments	Results for radiolabeled acetate, mannitol, and glycerol kinetic uptake and pulse-chase experiments for the species Cruciplacolithus neohelis	Cocco-Mix	CCMP_code
Raman Spectra of Bivalve Larvae	Raman spectra from several different bivalve species.	Raman Spec Bivalves	species_code
Reciprocal transplant expt. - ecological survey	Reciprocal transplant expt. - ecological survey, 2017	Varadero Reef	taxon_code
Reef biogeochemistry, metabolomics, and metagenomics	Reef biogeochemistry, metabolomics, and metagenomics	Coral Exometabolomes	coral
reef fish surveys	Results of fish surveys on experimental reefs at Lee Stocking Island, Bahamas.	Lionfish Invasion	species_code
Richness of experimental marine invertebrate communities across latitude		Competition and Predation across Latitude	Morph_taxa_num
Richness of marine invertebrate communities across latitude with exposure to predation		Competition and Predation across Latitude	Taxa_num
Sanger Sequencing Analysis of Potexvirus PCR Products (Potex-5 and Potex-2RC)	Sanger sequences Potex-5/Potex-2RC PCR products	VIDA Seagrass	Aphia_id
Seagrass fauna traits		Habitat Fragmentation	AphiaID
SECM fish catch	Fish catch data 1997-2006 in Southeastern Alaska	NEP	species_code
Shell dissolution data for Mytilus californianus		OA decoupling	AphiaID
Southern Ocean foraminifer N isotopes	Planktic foraminifer tissue and shell d15N from net tows in the African sector	N Isotopes Foraminifera, stable isotope instrumentation, Diatom-bound_N_Isotopes	species
species list	Names, codes, and characteristics of species observed during reef surveys in the Bahamas.	Lionfish Invasion	species_code
Species list	List of coral species with codes: Guam 2014	Reef Resilience in Guam	taxon_code
Species Sizes	Species Sizes	Urchin metapopulations	SpeciesID
St John Octocoral Abundances 2019	Octocoral colony heights measured during transect surveys at four sites on the south shore of St. John, US Virgin Islands in June-October 2019	Octocoral Community Dynamics	Species_code
Suppl 2c: microbial sample metadata	Microbial sample metadata, sequencing and treatment details, temperature and salinity	HERBVRE	host_taxon_abbreviation
Survey disease oysters	Survey disease status and sizes	Oyster Reef Reversal	species
Survey Quadrats: organism sizes	Survey counts and sizes	Oyster Reef Reversal	species
Synechococcus accessions	Synechococcus accessions	Phytoplankton Community Responses	Tax_ID, Isolate
Synechococcus growth rates	Synechococcus growth rates	Phytoplankton Community Responses	Isolate
Synechococcus TPC parameters	Synechococcus thermal niche calcs	Phytoplankton Community Responses	Isolate
Thermal capacities	PFT Thermal Response - Thermal capacities	Phytoplankton Community Responses	isolate_code
Thermal growth rates	PFT Thermal Response - Thermal growth rates	Phytoplankton Community Responses	isolate_code
Trawl survey: species list	Species list	PelagicHypoxia	AphiaID
Vent Parasite Dissection Data	Species dissection rom the 9°50’N deep-sea hydrothermal vent field.	Vent Settlement Cues, EPR Functional Diversity	HOST_SPECIES_LSID, PARASITE_SPECIES_NAME_AphiaID, PARASITE_SPECIES_NAME_LSID, HOST_SPECIES_AphiaID
Vent_CSP_SAG	Single amplified genomes (SAGs) of microbial cells isolated from Crab Spa, East Pacific Rise	Microbial Communities at Deep-Sea Vents	taxon_oid
Vertical Plankton Tow - VPT	Vertical Plankton Tow (VPT) data from 1997 - 2003	NEP	nodc_code
West Antarctic Isoscape Data	C and N isotope data for zoo- and phytoplankton from west Antarctica	Southern Ocean Pinnipeds	WoRMS_LSID, AphiaID
zoo_cb_meter_bongo	Zooplankton meter3 counts from GSO/URI - Bongo Nets only	GB	taxon_code
zoo_cb_meter_moc	Zooplankton meter3 count data from GSO/URI - MOCNESS 1m2 only	GB	taxon_code
zoo_cb_meter_pump	Zooplankton meter3 counts from GSO/URI - Pump data only	GB	taxon_code
zoo_sq_meter_bongo	Zooplankton meter2 counts from GSO/URI - Bongo Nets only	GB	taxon_code
zoo_sq_meter_moc	Zooplankton meter2 count from GSO/URI - 1m2 MOCNESS nets only	GB	taxon_code
zoo_sq_meter_pump	Zooplankton meter2 counts from GSO/URI - Pump data only	GB	taxon_code

Programs associated with this parameter

U.S. GLOBal ocean ECosystems dynamics

Status message

Database

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Parameter: taxon_code