16S and 18S rRNA gene amplicon sequences | 16S and 18S rRNA gene amplicon sequences | HHQSignals | bioproject_accession, biosample_accession |
16S rRNA and hydrazine oxidoreductase genes | Sequence accession numbers of 16S rRNA and hydrazine oxidoreductase genes (hzo) from Cape Fear River Estuary. | Estuarine ANAMMOX | accession_number_link |
16S rRNA clone library | NCBI Accessions for 16S rRNA clone libraries made with bacterial 8F and 519R primers. | CoFeMUG | NCBI_Accession |
16S rRNA gene and particulate monooxygenase diversity | 16S rRNA gene and particulate monooxygenase diversity | Authigenic Carbonate Ecosystems | accession_number |
16S rRNA gene clones from NE Pacific bacterioplankton | 16S rRNA gene clones from bacterioplankton in the NE Pacific Ocean | Sulfur Oxidizers | NCBI_accession |
16S rRNA gene from DNA | 16S rRNA gene (from DNA) | Subvent_Biosphere_Sediments | MGRAST_Accession_ID |
16S rRNA gene sequences from iron mats | Accession links to NCBI for 16S rRNA gene sequences from iron mats | Ecology of Vent Mats | accession_id |
16S rRNA gene sequences of bacteria from members of an Arctic clade | 16S rRNA gene sequences of bacteria including some of Arctic96BD-19/SUP05 clade | Sulfur Oxidizers | NCBI_Accession |
16S rRNA sequence and collection data | Microbial 16S rRNA sequence data from East Pacific Rise biofilms | Microbial Communities at Deep-Sea Vents | BioProject, SRA_experiment, NCBI_accession |
16S rRNA Sequences | 16S rRNA sequence data from venting fluids and microbial mats at Axial Seamount, 2011. | AXIAL | biosample_number, biosample_link, bioproject_accession, bioproject_link |
515F-926R 16S rRNA accessions | 515F-926R 16S rRNA accessions, Mariana and Kermadec trenches, 2014 | Mariana Perspectives | Bioproject_link, Biosample_link |
5c_BLAST results | GenBank BLAST results of copepod nauplii gut contents | food limitation in copepod nauplii | GenBank_id |
Accession Numbers | Accession numbers and characteristics of 33 microsatellite loci developed for Gracilaria vermiculophylla. | Gracilaria effects | accession_num, accession_URL |
Accession numbers | Palatability of non-native alga | Genetic Adaptation Marine Inv | accession_number |
Accession numbers (P. carterae viruses and field samples) | Accession numbers for genetic sequences from virus-enriched field samples and P. carterae CCMP 645 culture co-infections | Marine Chronic Viruses | accession_id |
Acropora hyacinthus ITS2 amplicon sequencing | | Moorea coral bleaching | Accession |
Alteromonas ancestor | Clones of Prochlorococcus MIT9312 and link to BioProject | P-ExpEv | bioproject_accession, biosample_accession |
Alteromonas macleodii MIT1002 replete proteome | Alteromonas macleodii MIT1002 replete proteome | C-CoMP Model Bacteria | ncbi_id |
Anaerobic Peru Margin 2002 | Sub-seafloor metatranscriptomes from anaerobic Peru Margin sediments collected on JOIDES Resolution, Leg 201. | Microbial Euk Div Mar Subsurface | SRA_URL, accession_URL, accession_number, SRA_number |
Anaerobic Sediment 18S rRNA amplicons | Iberian Margin Anaerobic Sediment 18S rRNA amplicons. | Subseafloor Microbial Ecology | BioProject_ID, BioProject_URL, SRA_ID, SRA_URL |
Anderson & Rynearson 2020: Skeletonema CHN | CHN | Phytoplankton Community Responses | GenBank |
Anderson & Rynearson 2020: Skeletonema thermal growth | Anderson & Rynearson 2020: Skeletonema thermal growth | Phytoplankton Community Responses | GenBank |
ARISA bin taxonomy | Putative taxonomic information for ARISA bins as generated from clone libraries, | Bacterial, Archaeal, and Protistan Biodiversity, Marine Viral Dynamics | Accession, SecAccession |
Assembled genome sequence for the virus ANMV-1 | Assembled genome sequence for the virus ANMV-1 | Viruses in Methanotrophic Marine Ecosystems | Accession |
Assembled metagenome sequences > 500 bp | Assembled metagenome sequences > 500 bp from EPR, Lo'ihi, and control | EPR and Loihi basalt genomes | NCBI_accession |
Asteroid viral and bacterial metagenome genetic accession information | | Sea Star Microbiology | Accession_number |
Atlantic silverside (Menidia menidia) cDNA transcriptome and TSA accessions | Atlantic silverside (Menidia menidia) cDNA transcriptome and TSA accessions | Fishery Genome Changes | accession_id, BioProject |
Atlantic silverside (Menidia menidia) raw low-coverage genomic sequence accessions | Accession numbers for raw low-coverage genomic sequence reads from 876 different Atlantic silverside individuals | Fishery Genome Changes | SRA_Accession, BioSample_Accession, BioProject_Accession |
bacterioplankton_dmdA_sequences | Links to published dmdA sequences from marine bacterioplankton from Sapelo Island, GA. | En-Gen DMSP Cycling | accession_number |
BATS_cDNA_sequences | Link to published bacterial cDNA sequences from BATS station. | En-Gen DMSP Cycling | repository |
Brothers Volcano Metagenome-Assembled Genome Accession Numbers | Brothers Volcano Metagenome-Assembled Genome Accession Numbers | Brothers Volcano Microbiology | WGS_accession |
BWLD-C7 subsurface microbes | BWLD-C7 subsurface microbes | Virus-host anoxic sediment | sample_accession, bioproject_accession |
Candidatus Thioglobus autotrophica strain EF1 | Complete genome sequence - first cultured chemoautotroph from SUP05 clade | Sulfur Oxidizers | GenBank_accession |
Candidatus Thioglobus singularis strain PS1 | Complete genome sequence - first cultured mixotroph from SUP05 clade | Sulfur Oxidizers | GenBank_accession |
Cannon_2013_T2: NCBI accessions | Hemichordata and Echinodermata NCBI accessions | Antarctic Inverts | accession_rDNA_18S, accession_rDNA_16S |
Cannon_2014_S2: Hemichordata and Echinodermata sample log and accessions | Hemichordata and Echinodermata transcriptome NCBI accessions | Antarctic Inverts | NCBI_accession |
CARP accession numbers | Sequence accession numbers for coral acid rich proteins (CARPs) from Stylophora pistillata. | CROA | accession_number |
Chemistry and cell counts | Chemistry and cell counts of formation fluids from North Pond | North Pond Microbes | bioproject_id |
Circovirus DNA Sequence Information | DNA sequences of viruses associated with Copepods | Viruses in Copepods | accession_no |
cluster analysis - cross-phyla protein clustering | Cross-phyla clustering of non-redundant carbonate organic matrix proteins grouped by hierarchical clustering. | CROA | coral_accession, mollusk_accession, sea_urchin_accession |
COLI 16S rRNA sequences | 16S rRNA Sequences from cathode-oxidizing lithoprophic isolates (COLI) from Catalina Harbor Marine sediments. | PassElectronsThruMarSed | accession_num, accession_link |
Community 16S rRNA gene sequences | 16S rRNA accessions | Vibrio-dust deposition | BioProject |
Copepod Bacteria RNA transcriptome Sequences | Bacteria assemblages associated with Eurytemora affinis in both salt and fresh water | CopepodMicrobiome | SRA_accession_number |
Copepod RNA-Seq sample information and accessions | | Neocalanus Gulf of Alaska | BioProject, NCBI_Biosample_Acc_No, NCBI_SRX_Acc_No |
Coral Associated Microbes on Mo'orean Coral Reefs | Bacteria and Archaea found on coral, sediment, and water in Mo’orea, French Polynesia | Moorea Virus Project, Ecosystem Impacts of Coral Bleaching | BioSample_accession |
Coral cDNA Expressed Sequences | cDNA Expressed Sequence Tags for the corals Acropora palmate and Orbicella faveola | SymBioSys | GenBank_GI, GenBank_ACC, EST_Name |
Coral colony sequece accessions: Hidden resilience to recurrent bleaching | | Bleaching American Samoa | Accession |
Coral colony sequence accessions: The genomics of recovery from coral bleaching | | Bleaching American Samoa | accession |
Coral images and accession numbers | Species images and accession numbers for tissue, mucus, and holobionts analyzed. | Coral Microbial Relationships | tissue_accessionNumber, tissue_accessionLink, mucus_accessionNumber, mucus_accessionLink, holobiont_accessionNumber, holobiont_accessionLink |
coral life stages - Illumina | Illumina sequenced 16S rRNA genes amplified from different life stages of 2 corals | MiCoDe | BioSample, SRA_accession |
Coral reef seawater microbial communities | Coral reef seawater microbial communities | Coral Exometabolomes | NCBI_BioProject_accession_number, NCBI_BioSample_accession_number |
Coral Sample Microbiome | Coral Sample Microbiome | Killer Seaweeds | Accession, BioProject, Object_ID |
Coral SSU rRNA gene database | Coral SSU rRNA gene database | Coral Microbial Relationships | gi_number, Accession_number, Accession_Number, Sequence_Identifier |
Coral-bacterioplankton data from mesocosm experiments | Bacterioplankton data from coral and coral mucus aquaria experiments. | Coral Microbial Relationships | accession_number |
Crassostrea virginica gonad MBD-BSseq | GenBank metadata for Eastern oyster gonad methylation and OA | Epigenetics to Ocean | bioproject_accession, biosample_accession |
Cyanobacteria cultures used to generate DNA reference library | Cyanobacteria cultures accessions | Tango in the Mat World | NCBI_Accession |
Cyanomyovirus genome sequences | Genbank accession numbers for genome sequences of cyanomyoviruses collected from the coastal waters of North America | Cyanophage-Synechococcus interactions, Cyanophage Evolutionary Ecology | Genbank_accession |
dataset1_Krug_et_al_2015: Suppl. Table 3: Accessions | Table 3: accessions: COI, 16S, 28S. H3 for ~200 spp. | PLDvFST | accession_16S, accession_H3, accession_COI |
dataset2_Krug_et_al_2012: Elysia accessions | Elysia spp. accessions for COI, 16S, H3 | PLDvFST | NCBI_H3_accession, NCBI_COI_accession, NCBI_16S_accession |
dataset3_Supp1_Krug_et_al_2011: Elysia sequences | Accessions for COI, 16S, H3 for 18 Elysia species | PLDvFST | accession_COI, accession_16S, accession_H3 |
dataset4_Krug_et_al_2012: Philine sequences | Accessions for 16S for Philine species | PLDvFST | accession_16S |
dataset5_Vendetti_et_al_2012: Elysia pusilla sequences | Accessions for COI, 16S, H3 from Elysia pusilla and E. spp. | PLDvFST | accession_COI, accession_16S, accession_H3 |
dataset6_Krug_et_al_2013: Sequences | Accessions for COI, H3 for three species complexes | PLDvFST | accession_COI, accession_H3 |
dataset8- Oxynoe sequence data | Species names, sample codes, and collection details for sequenced taxa used in phylogenetic analyses. | PLDvFST | accession_COI, accession_16S, accession_H3, specimen_accession_numbers |
Deep Biosphere Eukaryotic rRNA | Sub-seafloor sediment eukaryotic rRNA collected on JOIDES Resolution Legs 201 and 204, R/V Maria Merian at North Pond, and R/V Meteor at the Benguela Upwelling System. | Microbial Euk Div Mar Subsurface | SRA_number, SRA_URL |
Deep-sea larvae for microbiome study | Deep-sea larvae for microbiome study | Mariana Back-arc Vents, Metacommunity Dynamics, EPR Functional Diversity | microbiome_16S_Dryad |
Delta Nitrification Study - GenBank Accession Numbers | GenBank accession numbers for ammonia oxidizer genes. | N-Cycling Microbial Communities | accession_numbers |
DHAB halocline - nematodes | Metatranscriptome data for pools of 10 nematodes picked from halocline and nearby control sediments. | DHAB Metazoans | BioSample_id, SRA_exp_id, SRA_run_id, BioProject_id |
Diatom cultures used to generate DNA reference library | Diatom culture accessions | Tango in the Mat World | NCBI_Accession |
Diatom Matrix Mass Spectrometry | MetaboLights accessions: MS samples | Metabolic Currencies, Carbon Currencies Microbes | MetaboLights_accession_number |
Diatom Matrix NMR | MetaboLights accessions: NMR samples | Metabolic Currencies, Carbon Currencies Microbes | MetaboLights_accession_number |
Diatom Matrix RNAseq | NCBI accessions | Metabolic Currencies | NCBI_Bioproject_Accession, BioSample, NCBI_Genome_Accession |
Diatom microbiome | Identification of microbiome from different Pseudo-nitzschia species | bacteria, virus, diatom interactions | NCBI_bioproject_id |
Diatom reference sequences | Reference sequences, genes, and K0 numbers for sampled diatoms. | Polar_Transcriptomes | K0_accession_link, accession_number, accession_link, K0_number |
DICE_sequences | Links to published dmdA, cDNA, and RNA sequences from the Dauphin Island Cubitainer Experiment (DICE). | En-Gen DMSP Cycling | sample_accession |
Diel_Metatrans | Diel_Metatrans | CANON, C-MORE | SRX, BioSample, BioProject |
DNA and cDNA (RNA) 18S V4 tag sequences from 5m and DCM | | SPOT | bioproject_accession, Accession |
DNA primer accession numbers | Accession numbers of microsatellite DNA primers and links to GenBank. | Pop connectivity of coral reef fishes | GenBank_accession_number, accession_number_link |
Domel_2017_T1: Pallenopsis patagonica specimen and outgroups with accessions | Pallenopsis patagonica specimen and outgroups with accessions | Antarctic Inverts | ZSM_voucher_number, COI_GenBank_BOLD_number, ITS_GenBank_BOLD_number |
Dorado Outcrop basalt DNA sequences | Accession numbers for clone and Illumina amplicon sequence libraries from Dorado Outcrop basalts | Dorado ridge flank environment | accession_number, accession_link |
DYEatom: Metatranscriptome accessions and assembled contigs | | Diatom Silicification | BioSample, Accession, ID |
EPR 9 North Plume Particles | Bacterial 16S rRNA sequences from hydrothermal plume particles | RESET06 | accession_link, popset_id, popset_link, accession_num |
EPR 9N Inactive Sulfides | Bacterial 16S rRNA sequences from inactive sulfide chimneys | Bacwards | accession_num, accession_link, popset_id, popset_link |
ESP 2016 Seq | Metagenomic, metatranscriptomic, and single cell sequencing data from the Fall 2016 ESP deployment in Monterey Bay, CA | OceanSulfurFluxBact | GOLD_Project_ID |
ETNP ODZ Metagenomes April 2012 | Assembled metagenomes collected in the Eastern Tropical North Pacific Oxygen Deficient Zone in April 2012 on TN278 | EAGER Deep Prochlorococcus | Short_Read_Archive_Accession_Number, Whole_Genome_Shotgun_Accession_Number, WGS_Velvet_Assembly, WGS_MEGAHIT_Assembly, BioProject_Accession, BioSample_Accession_Number |
ETNP Viromes | Accession Numbers of Viral Metagenomes from the ETNP | OMZ Viruses | JGI_Project_Id, IMG_Genome_ID |
Extracellular reef seawater metabolites from the Jardines de la Reina reef-system | | Coral Exometabolomes, RAPID Mass Spec for Dispersants | MetaboLights_Study_Number |
GenBank accessions | GenBank accession numbers and links for microbial isolates from sediment samples collected at Paleochori Bay, Milos island, Greece | Hydrothermal Autotrophic Carbon Fixation | GenBank_acc |
Gene expression profiles from high CO2-adapted Trichodesmium | gene expression profiles obtained from high through put illumina sequencing of multiple long-term evolved lines of Trichodesmium. | Trichodesmium in High CO2 | accession_number |
Gill 16S rRNA amplicon sequencing | GenBank Short Read Archive (SRA) sequence accession numbers for 16S rRNA gene amplicon data from the gills of Alviniconcha species, Ifremeria nautilei, and Bathymodiolus septemdierum. | Eco Dyn W Pacific Vents | SRA_Accession |
Glaucus atlanticus sample voucher log | Glaucus atlanticus sample locations, museum voucher and GenBank accession numbers | Neuston Phylogeny | accession_num |
GO-SHIP SPE-DOC | GO-SHIP SPE-DOC | DOC 14C and 13C | UCI_AMS_Number |
Gulf of Alaska copepods: annotated transcriptomes | The dataset includes the annotation files of nine high-quality de novo transcriptomes generated from shotgun assemblies of short-sequence reads. | Neocalanus Gulf of Alaska, Diapause preparation | TSA_Master_Accession |
Halanych-Kocot_2014_T1: NCBI accessions | Antarctic invertebrate collection locations and NCBI SRA accessions | Antarctic Inverts | NCBI_SRA_accession |
Halanych_2013_T1: NCBI accessions | NCBI accessions | Antarctic Inverts | accession_rDNA_18S, accession_rDNA_16S |
haplotype_accession_numbers | Accession numbers for planktonic ciliate haplotypes | CiliateDivGenePop | accession_number |
Harder_2016_T1: sea spider Pallenopsis sampling sites and COI NCBI accessions | Sea spider Pallenopsis sampling sites and COI NCBI accessions | Antarctic Inverts | GenBank_accession |
Havird_2015_T1: NCBI accessions: COX and PXDN | NCBI accessions | Antarctic Inverts | NCBI_accession |
Havird_2015_T2: NCBI accessions: MPO and PXDN | NCBI accessions: MPO and PXDN outgroups | Antarctic Inverts | NCBI_accession |
Hawaiian reef fish genetic accessions 2016 | Genetic accessions at NCBI Genbank | Hawaiian Fish Origins | Genbank_Accession_Range |
Heterosigma akashiwo acclimation | Heterosigma akashiwo acclimation - BioProject PRJNA377729 | P-ExpEv | bioproject_accession |
Hurricane Harvey Coral Gene Expression | | Rapid Reefs Harvey | SRA, Accession |
Hydrographic and nutrient data | | ETNP_ParticleOmics | NCEI_accession |
Illumina Sequences | | SedimentaryIronCycle | sequence_accession_number |
Invertebrate Barcodes from Papua New Guinea | | OA_Gradient_Biodiversity | Accession |
Isolate information | Isolate information on genes found in samples collected on LMG1411. | Polar_Transcriptomes | GenBank_bestHit, accession_number, accession_link |
Isolation culturing and sequencing of bacteria and viruses | Environmental data describing microbes and viruses submitted to NCBI to generate BioSample accession numbers. | Marine Bacterial Viruses | bioproject_accession |
ITS_sequence_accessions | Diatom ribosomal DNA sequence accession numbers. | Diatom Gene Flow | accession_number_link, accession_number |
Janosik_2013_T2: outgroup species and accessions | Outgroup species and accessions | Antarctic Inverts | NCBI_accession |
JTMD Mytilus population genetics | Population analysis and metagenomics of Japanese tsunami marine debris mussels | JTMD-BF | accession_number |
Juan de Fuca Ridge Flank SSU rRNA gene sequences | SSU rRNA gene sequences from marine sediments, marine subseafloor, and deep seawater | microJdFR | Accession_id, Accession_Link, BioSample_ID, BioProjectID |
Kaneohe Bay RNA virus metagenomes | Pyrosequencing reads (454) of marine RNA virus metagenomes | Diversity and ecology of marine RNA viruses | iMicrobe_accession |
Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry | Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry | Pelagibacteromics | Metagenome_ID |
Keratoisis Radiocarbon Dates | Keratoisis Radiocarbon Dates | Bamboo Coral Boron Isotopes | Accession_Number |
kinetoplastid SSU rRNA seq. | Microbial metatranscriptomics: upper and lower halocline water column | Pickled Protists | accession_number |
Krill barcodes | Euphausiid DNA barcode metadata and accession numbers from global oceans | Red Sea Krill | NCBI_accession |
Labyrinthulomycete genetic sequences | samples around Long Island, NY for Labyrinthulomycete PCR and sequences | LabyLI | accession_number |
Lau Basin and Loihi Seamount microbial mats | Metegenomic sequences from Lau Basin low temperature vents and Loihi Seamount. | Vent Mn-Fe Microbes | BioProject, BioProject_URL |
Lau Basin Bacterial Low Temp Geomicrobiology | Bacterial 16S rRNA sequences from seafloor rocks (silicates and sulfides) | Lau Basin Geomicrobio | accession_link, popset_id, popset_link, accession_num |
Marine Bacterial Isolates | Bacterial isolates from marine diatom Psuedo-nitzschia | bacteria, virus, diatom interactions | GenBank_accession |
Metabarcoding zooplankton at station ALOHA: NCBI SRA accession numbers | NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample | Plankton Population Genetics | bioproject_accession, biosample_accession |
Metabarcoding zooplankton at station ALOHA: OTU tables and fasta files | Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU | Plankton Population Genetics | NCBI_top_hit |
Metagenome | Metagenomic data | Subvent_Biosphere_Sediments | MGRAST_Name, MGRAST_ID |
Metagenome of Bleached and Non-bleached corals | | Moorea Virus Project | BioSample |
Metagenomes - Iberian Margin | Iberian Margin Anaerobic Sediment Metagenomes. | Subseafloor Microbial Ecology | SRA_ID, SRA_URL |
metatranscriptomics - Niskin vs. in situ | Microbial metatranscriptomics: Niskin vs. in situ sampler | Pickled Protists | accession_number |
metatranscriptomics - upper_lower halocline | Microbial metatranscriptomics: upper and lower halocline water column | Pickled Protists | accession_number |
Methane seep 16S rRNA sequences | 16S rRNA gene sequences of cells in marine methane seep sediments | Cell-sorting and enrichment | accession_number |
Microbial 16S rRNA gene amplicon SRA numbers | Microbial 16S rRNA gene amplicon SRA numbers | DeepCCZ | bioproject_accession |
Microbial community composition McMurdo Spiophanes beds | McMurdo Spiophanes beds 16s V4 region community composition | McMurdo Benthos | accession, accession_link |
Microbial community composition of the Cinder Cones Cold Seep | Microbial community composition of the Cinder Cones Cold Seep | Cinder Cone Seep | accession |
Microbial eukaryotic diversity: Axial Seamount SRA | Axial seamount SRA | Microbial eukaryotes at hydrothermal vents | bioproject_accession |
Microbial eukaryotic diversity: Gorda Ridge SRA | Gorda Ridge SRA | Microbial eukaryotes at hydrothermal vents | bioproject_accession |
Microbial eukaryotic diversity: Mid-Cayman Rise SRA dataset | 18S rRNA amplicon sequencing of microbial eukaryotes | Microbial eukaryotes at hydrothermal vents | Experiment_Accession |
Microbial eukaryotic focused metatranscriptome data | | SPOT | SRA_run, SRA_study, bioproject_accession, biosample_accession |
Microbial isolates | Microbial isolates from sediment samples collected at Paleochori Bay, Milos island, Greece | Hydrothermal Autotrophic Carbon Fixation | DSMZ_accession, GenBank_acc |
Microbiome dynamics of coral reef and cleanerfish | Microbiome dynamics of coral reef and cleanerfish | Cleanerfish microbiomes | SRA_accession |
Microsatellite primers for Pollicipes elegans | Microsatellite primer sequences from Pollicipes elegans | Gene flow across the tropics | NCBI_accession |
mRNA sequencing - RNAseq | mRNA sequencing - RNAseq | OA pH, Temp, Calc Inverts | Accession_Number |
MtCOI sequence accessions - Pollicipes elegans | Cytochrome oxidase I DNA sequences from Pollicipes elegans | Gene flow across the tropics | NCBI_accession |
MWS accession numbers | GenBank accession numbers for pathogens identified as causing MWS from Kaneohe bay, Oahu, Hawaii | coral-pathogen interaction | Genbank_accession_num, accession_link |
NCBI accession numbers for S. arcuata and S. meunieri | NCBI accession numbers for S. arcuata and S. meunieri | Ciliate Omics | Sequence_Accession |
NCBI BioSample accessions for viruses and microbes | NCBI issued accession numbers for BioSamples of microbes and viruses. | Marine Bacterial Viruses | BioProject_ID, BioSample, accession |
Nitrite reductase genes sequence accessions | Nitrite reductase genes sequence accessions | N-Cycling Microbial Communities | accession_range, accession_id, accession_link |
Nitrosopelagicus brevis genome | NCBI accession number link to the closed genome of Nitrosopelagicus brevis CN25 | AmoA Archaea | accession no. |
Nmarina global proteome | Nmarina global proteome | CliOMZ | Accession_number |
Nmarina targeted proteome | Nmarina targeted proteome | CliOMZ | Accession_number |
NP_16SrRNA_Huber | v6 16S rRNA from IODP boreholes, seawater, and drilling mud at North Pond. | North Pond Microbes | bioproject_id |
Ocean Crust Microbiome Amplicon Metadata | Metadata for sequence datasets used in ocean crust microbiome survey | Slow Life in Crust | SRA_Run, SRA_Study |
OTU and Sequences | OTU and sequences | St. John LTREB, RUI-LTREB | Accession_number |
Oyster Rocks CpG | Metagenomes from Delaware estuarine riverbank sediment. | Microbial CpG Methylation | ENA_ID |
Particle Genomes | 16S rRNA and genomes of particle associated taxa | MINTPOM | Accession_number |
Peptide spectral counts (MetZyme 0.2) | Peptides and their spectral counts and precursor intensities from KM1128 | MetZyme, HiCO2_AdaptCyano | protein_accession_num |
Peru Margin iTAGs | Fungal iTAG analyses on Peru Margin sediment core samples | Fungal and prokaryotic activity in subseafloor | accession_num, accession_link |
Peru Margin SAGs | Sub-seafloor single amplified genomes (SAGs) from anaerobic Peru Margin sediment. | Chloroflexi in deep sea sediments | BioProject_ID, accession_num, BioProject_link, accession_link |
phagotrophic protist accession numbers | Links to GenBank accession numbers for 18S rDNA | Feeding responses of marine protists | accession_number |
Phytoflux_BATS | BATS phytoplankton and cyanobacteria DGGE DNA data | Plankton particle flux | accession_number_1, accession_number_2 |
Phytoflux_BATS - Clone Library 2008-1010 | Phytoplankton clone library matches from BATS cruises 2008-2010 | Plankton particle flux | accession_number, acc_closest_match, acc_cl_cult_match |
picoeukaryote accession numbers | Links to Accessions for 18S rDNA , chloroplast and metagenomics data | PHYTO_GENOME | Accession_Number_Series, Accession_Number_Link |
planktonic ciliates: DNA accessions | Planktonic ciliate DNA sequence accession numbers at NCBI GenBank | CiliateSequencing | NCBI_accession |
poly-A mRNA | The eukaryotic (poly-A) metatranscriptome for Canterbury Basin | Fungal and prokaryotic activity in subseafloor | accession_num, accession_link |
Polychaete DNA sequences | DNA sequence data deposited on GenBank for polychaetes used in the project studying the evolution and mechanics of burrowing. | Burrowing polychaete mechanics | accession_number |
Presence and absence of iron and light-related functional genes | Protein information obtained from samples collected on LMG1411. | Polar_Transcriptomes | KO_num, accession_link |
ProteOMZ Exclusive Peptide Level Spectral Counts | | ProteOMZ (Proteomics in an Oxygen Minimum Zone), MM Saito | KO, Combo_KO, Combo_EC, blast_accession, blast_best_hit_taxon_id |
ProteOMZ Peptide Level Spectral Counts | Total spectral counts of peptides from the R/V Falkor cruise 160115 in the Central Pacific for the ProteOMZ expedition in 2016. | ProteOMZ (Proteomics in an Oxygen Minimum Zone) | Protein_accession_numbers |
ProteOMZ Protein Level Spectral Counts | Total spectral count of proteins from R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific in 2016. | ProteOMZ (Proteomics in an Oxygen Minimum Zone) | best_hit_annotation, KO, EC, uniprot |
Pro_ancestor | Clones of Prochlorococcus MIT9312 and link to BioProject | P-ExpEv | NCBI_BioProject |
Pseudo-nitzschia amplicon sequence variants (ASVs) | Pseudo-nitzschia asv | C-AIM | NCBI_GenBank_Accession_Number |
Raw LC-MS/MS | Raw LC-MS/MS data with list of identified peptides in xml format. | Proteomic profiling of Mariprofundus ferrooxydans | PRIDE_project |
Raw LC-MS/MS and DNA | Raw LC-MS/MS data, with list of identified peptides, and DNA sequences. | Proteomic profiling of Mariprofundus ferrooxydans | identifier |
Raw metagenome and metatranscriptome from an Fe mat at Loihi Seamount | Sample accession numbers for raw metagenome and metatranscriptome Illumina HiSeq 2500 sequencing from an Fe mat at Loihi Seamount | Ecology of Vent Mats | accession_id |
reconstructed genomes | Reconstructed genomes from North Pond | North Pond Microbes | bioproject_id, BioSample |
Reef biogeochemistry, metabolomics, and metagenomics | Reef biogeochemistry, metabolomics, and metagenomics | Coral Exometabolomes | Project_Accession |
Reef Fish Genetic Accessions 2019 | Hawaiian Reef Fish Genetic Accessions | Hawaiian Fish Origins | Genbank_Accession_Range |
RNA sequence accessions at NCBI | | Kleptoplasty | SRA_Study, BioProject, BioSample |
RNA sequences | NCBI RNA accessions for multi-stressor conditions of polar fishes | polar_fish_adapt | NCBI_accession |
Ross Sea metaproteome protein spectral counts | | CORSACS | kegg_id, pfams_id, uniprot_id |
Ross Sea sequences | Ross Sea sequences link | TRACERS | NCBI_accession |
Ruergeria pomeroyi DSS-3 replete proteome | Ruergeria pomeroyi DSS-3 replete proteome | C-CoMP Model Bacteria | ncbi_id |
Salp genome and transcriptome | Antarctic salp genome and RNAseq transcriptome | Salp_Antarctic | BioSample_accession, SRA_accession |
Sample Accession Numbers | Project accession and library information on each experimental sample | Upwelled Phytoplankton Dynamics | bioproject_accession |
Sample locations of neustonic nudibranch Glaucus spp. | Location data for genetic samples of nudibranch Glaucus atlanticus from global gyre systems | Neuston Phylogeny | accession_num |
Samples Sequenced for Metabarcoding | Cyanobacterial and diatom samples sequenced for metabarcoding | Tango in the Mat World | NCBI_BioProject |
Sanger Sequencing Analysis of Potexvirus PCR Products (Potex-5 and Potex-2RC) | Sanger sequences Potex-5/Potex-2RC PCR products | VIDA Seagrass | Genbank_accession |
Santa Monica Bay 18S-V4 sequencing | | SPOT | Accession |
Sargasso Sea surface bacteria accession numbers | Paired metagenomic and metatranscriptomic data from 2 cruises in the spring of 2010 and the summer of 2010 in the Sargasso Sea | Active bacteria in surface waters | accession_number |
SCTLD rapid microbiome characterization | SCTLD microbiome | Multi-Species Coral Disease | NCBI_BioProject_accession_number, NCBI_BioSample_accession_number |
Sea star specimen information: California Academy of Sciences | Sea star specimen information from the California Academy of Sciences | Sea Star Microbiology | GenBankNum |
Seawater data and site descriptions | Site descriptions and physical environmental conditions of reefs where sampling occurred. | Coral Microbial Relationships | accession_numbers, accession_links |
sea_fan_parasite_sequences | Accession numbers for Labyrinthulomycetes detected in sea fans | Climate_CoralDisease | accession_number |
sea_fan_sequences | Accession numbers for Gorgonia ventalina (sea fan) sequencing data | Climate_CoralDisease | accession_number |
Sediment Bacteria Accession Numbers | Lake surface sediment and submarine canyon sediment bacterial V1-V3 iTag sequence libraries. | Buried Alive | accession |
Sedtrap Metagenomes | Marine sediment trap metagenomes | C-MORE | BioProject, SRX, BioSample |
Seep Sediment Metagenome ANM1 - Genbank BioSample SAMN00215736 | Seep Sediment Metagenome ANM1 | Viruses in Methanotrophic Marine Ecosystems | Accession |
sequence accession numbers | GenBank accession numbers for sequences from deep-sea protobranch bivalves. | Ev Deep Sea Molluscs II | Genbank_accession_number, accession_link |
sequence accessions | Accession numbers for sequences generated from hydrothermal plume samples. | Guaymas plumes | accession_num |
Sequence accessions: archaeal and bacterial clone libraries | Sequence accession numbers for archaeal and bacterial clone libraries from Guaymas Basin sediments | Microbial Biogeo Guaymas | accession_num, popset_num, accession_link, popset_link |
Sequence data accession numbers from mesocosm experiments | Sequence data accession numbers originating from coral and coral mucus experiments. | Coral Microbial Relationships | accession_number |
sequence_accessions | Sequence accession numbers from microbialite mats. | Protists_Stromatolites | accession_number_range, link |
Sequencing Reads | Accession numbers | KeysCoralPopgen | Accession |
SERC 2019 viral dilution incubations | Gene copy number counts and 16S analyses of July 2019 Rhode River surface water incubated with or without viral dilution | identify cyano infections | Library_Accession_Number_16S |
SERC time series | Water quality data, gene copy number counts, and 16S analyses from Rhode River samples collected at SERC | identify cyano infections | Library_Accession_Number_16S, Shotgun_Metagenome_Library_Accession_Number, Fusion_Amplicon_Accession_Numbers |
SIMCO metatranscriptome sequence accessions | SIMCO metatranscriptome sequence accessions | SIMCO | SRA_Experiment |
Single amplified genomes | Single amplified genomes (SAGs) | Dark ocean chemoautotrophs | IMG_Genome_ID |
Single-cell genomics of Chloroflexi | Chloroflexi accessions | Subsurface FeOBs | NCBI_BioSample, NCBI_accession_number, IMG_taxon_id |
Skeletal Organic Matrix Proteins | LC-MS/MS sequenced proteins extracted from Stylophora pistillata skeleton. | CROA | accession_number, accession_num_link |
soxB Sequences | soxB gene sequence data from microbial mats at Axial Seamount, 2011. | AXIAL | accession_number_range, NCBI_PopSet_ID, NCBI_PopSet_link |
Sponge holobiont accessions and metadata | Sponge holobiont accessions and metadata | DimensionsSponge | BioProject, BioSample |
Sponge-Associated Microbial Communities (via 16S-V4 rRNA amplicon sequencing) Following Storm-Driven Flooding | | Rapid Reefs Harvey | Accession, SRA |
spp_barcodes | species barcodes and other genetic data | CMarZ_2004-2010 | AccessNo |
Substrate-specific metabolic responses of model marine bacteria | Substrate-specific metabolic responses of model marine bacteria - metadata for transcriptomic expression data | C-CoMP Model Bacteria | Accession |
Substrate-specific metabolic responses of model marine bacteria using proteomics | | C-CoMP Model Bacteria | SPO_ID_ACCESSION, KOfam_ACCESSION, KEGG_Module, Uniprot_accession |
Sulfitobacter phage accessions | Sulfitobacter phage accessions | Roseophage as a Model | accession_NCBI |
Sup_Aug-10-carbon | Sup_Aug-10-carbon | Lake Superior Radiocarbon | Accession_Number |
Symbiodiniaceae communities in corals with ITS-2 rDNA amplicon sequencing | | Moorea Virus Project | SRA_Run, BioSample_Accession |
Symbiont accession numbers | Accession numbers of symbiotic algae in coral | SymBioSys | Genbank_accession_num |
Synechococcus accessions | Synechococcus accessions | Phytoplankton Community Responses | Accession |
T. rotula Common Garden Experiment | T. rotula Common Garden Experiment | Phytoplankton Community Responses | Experiment_Accession |
Tam genome analysis | Thermovibrio ammonificans HB1 genome manual curation | Deep Biosphere Energy Limitation | Accession |
Thalassiosira Fe and light limitation - ENA accessions | ENA accessions for transcriptomes of T. oceanica and T. weissflogii grown in varied Fe and light | GeTFeHvCOdia | ENA_sample_accession, ENA_2nd_sample_accession, ENA_expt_accession, ENA_run_accession, ENA_study_accession, ENA_2nd_study_accession, sample |
Thalassiosira Fe and light limitation - NCBI and iMicrobe accessions | NCBI and iMicrobe accessions for transcriptomes of T. oceanica and T. weissflogii grown in varied Fe and light | GeTFeHvCOdia | MMETSP_sample_id, iMicrobe_sample_accession, NCBI_BioSample_id, NCBI_study_accession, NCBI_BioProject_id, NCBI_SRA_id |
Thaps microarrays - ISB | Microarrays for T. pseudonana diatoms grown in the laboratory under different conditions. | OA Diatom Response | GEO_accession |
Thaumarchaea transcriptomes | Thaumarchaea transcriptomes | AmoA Archaea | Accession |
Tidal study of seawater microbial communities | | Coral Exometabolomes | NCBI_BioProject_accession_number, NCBI_BioSample_accession_number |
Total spectral count of proteins (MetZyme 0.2) | Global metaproteomic dataset for KM1128 the METZYME expedition. | MetZyme | KO, EC, uniprot, PFams |
Transcription in marine bacteria | Transcripts in four cultivated marine bacteria | EAGER Respiration | Genbank Accession Number |
Transcriptomic response of Emiliania huxleyi to HHQ | Transcriptomic response of Emiliania huxleyi to HHQ | HHQSignals | series_accession, biosample_accession, biosample_link |
Trichodesmium AHL metatranscriptomes_AE1409 | GenBank Trichodesmium accessions and associated metadata | P Processing by Tricho | bioproject_accession, biosample_accession |
Trichodesmium consortia FASTq accessions | NCBI accession numbers for raw RNA-seq fastq files derived from laboratory-maintained Trichodesmium erythraeum cultures | HiCO2_AdaptCyano, TriCoLim | BioSample, SRA, GSM |
Trichodesmium consortia metagenomics | 16S tag data, metagenomic data, and a draft assembled genome of Altermonas macleodii derived from laboratory-maintained Trichodesmium erythraeum cultures | HiCO2_AdaptCyano | BioProject_link, accession_number, accession_link, BioProject_id |
Trichodesmium field metaproteomes - protein spectral counts | | MM Saito, MM Proteins and Organics Tech, Cyanobacteria Warming Responses, TriCoLim | uniprot_id |
Trichodesmium sequence accessions | GenBank Trichodesmium accessions and associated metadata | P Processing by Tricho | bioproject_accession |
V4 amplicon sequencing of coral tissue | Accession numbers and locations of species analyzed. | Coral Microbial Relationships | UCT_CV_glass_replicate_accessionLink, UCT_CV_garnet_accessionLink, UCT_CV_garnet_replicate_accession, UCT_CV_garnet_replicate_accessionLink, PB_V_accession, PB_V_accessionLink, PB_V_replicate_accession, UCT_CP_glass_accession, PB_V_replicate_accessionLink, UCT_CP_glass_accessionLink, UCT_CV_glass_accession, UCT_CP_glass_replicate_accession, UCT_CV_glass_accessionLink, UCT_CP_glass_replicate_accessionLink, UCT_CV_glass_replicate_accession, UCT_CV_garnet_accession |
V4 SSU rRNA gene primer validation for reef seawater | Partial SSU rRNA genes of bacteria and archaea from reef seawater samples produced using 515F/806R and 515F/806RB primers | Coral Microbial Relationships | primr_806R, primr_806RB |
Vent_CSP_SAG | Single amplified genomes (SAGs) of microbial cells isolated from Crab Spa, East Pacific Rise | Microbial Communities at Deep-Sea Vents | accession_IMG, GOLD_Analysis_project_id |
Vouchered specimens | Vouchered specimens | Costa Rica Seeps | genBankAccessionNumber |
Whole community metatranscriptomes | Whole community (3 domain) metatranscriptomes for Peru Margin and Canterbury Basin subsurface sediment core samples | Fungal and prokaryotic activity in subseafloor | accession_num, accession_link |
Whole genome sequence accessions from Ammonia-Oxidizing Archaea (AOA) | Whole genome sequence accessions from Ammonia-Oxidizing Arachae (AOA) | N-Cycling Microbial Communities | Draft_Genome_Accession, SRA_Accession |
WS1209 strains | Microbial culture collection, strain IDs, locations and depth from cruise WB1209 | CEMSB | GenBank_accession |