Instrument: Automated DNA Sequencer

Acronym:

Automated Sequencer

External Identifier:

» skos:closeMatch http://purl.obolibrary.org/obo/OBI_0400103

Description

A DNA sequencer is an instrument that determines the order of deoxynucleotides in deoxyribonucleic acid sequences.

Datasets

Dataset Name	Brief Description
16S and 18S rRNA gene amplicon sequences	16S and 18S rRNA gene amplicon sequences
16S and nifH Sequence Data
16S microbiome data for artificial reef sponges and seawater	16S microbiome data for artificial reef sponges and seawater
16S rRNA accessions: IODP Site 1244	16S rRNA gene amplicon sequence accessions, Hydrate Ridge, offshore Oregon
16S rRNA gene and particulate monooxygenase diversity	16S rRNA gene and particulate monooxygenase diversity
16S rRNA gene from RNA	16S rRNA gene (from RNA)
16S rRNA sequence and collection data	Microbial 16S rRNA sequence data from East Pacific Rise biofilms
16S rRNA sequences for outplanted Acropora cervicornis sexual recruits
16S V4 rRNA gene tag sequences from reef seawater	16S V4 rRNA gene tag sequences from reef seawater
18S rRNA gene tag sequences from DNA and RNA
515F-926R 16S rRNA accessions	515F-926R 16S rRNA accessions, Mariana and Kermadec trenches, 2014
5a_field collection	Field collection data for taxa detected in nauplii guts
5b_nauplii gut taxa	Taxa detected in field caught nauplii guts
5c_BLAST results	GenBank BLAST results of copepod nauplii gut contents
5d_molecular id of copepod guts	Identification of copepod gut contents
Accession numbers (P. carterae viruses and field samples)	Accession numbers for genetic sequences from virus-enriched field samples and P. carterae CCMP 645 culture co-infections
Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022	Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022
Acropora cervicornis bleaching sequences	Acropora cervicornis bleaching sequences
Acropora cervicornis transcriptomes: nutrient- and disease-exposed
Acropora cervicornis white band exposure experiment survival outcomes
Acropora cervicornis white band exposure experiment survival outcomes
Acropora cervicornis white band exposure experiment survival outcomes
Acropora cervicornis white band exposure experiment survival outcomes
Acropora palmata genotypes	Acropora palmata multilocus genotypes derived from five microsatellite markers
Acropora palmata genotypes for clonal age	Mutations at microsatellite loci of Acropora palmata
Acropora palmata mutations	Mutations at microsatellite loci of Acropora palmata
Acropora palmata symbiont genotypes	Symbiodinium ‘fitti’ multilocus genotypes derived from 13 microsatellite markers
Allele frequencies and FST estimates
Allele frequencies and FST estimates
Alteromonas ancestor	Clones of Prochlorococcus MIT9312 and link to BioProject
Alviniconcha gill transcriptomes	GenBank Short Read Archive (SRA) sequence accession numbers metatranscriptomic data from the gills of Alviniconcha species from R/V Falkor in the Eastern Lau Spreading Center, Lau Basin
Amplicon sequence variants (ASVs) and taxonomy of Pseudo-nitzschia spp.
Amplicon sequencing of ammonia oxidizing archaea amoA gene	Amplicon sequencing of ammonia oxidizing archaea amoA gene from cruise KM1314, Aug. 8 - Sept. 4, 2013 in the northern Pacific
Assembled metagenome sequences > 500 bp	Assembled metagenome sequences > 500 bp from EPR, Lo'ihi, and control
Asteroid viral and bacterial metagenome genetic accession information
AT26-18_FLOCS_DNA16S	16S rRNA gene amplicon sequences from FLOCS experiments at the Juan de Fuca Ridge CORKs
AT39-01 CathodicEET Amplicons
Atlantic silverside (Menidia menidia) cDNA transcriptome and TSA accessions	Atlantic silverside (Menidia menidia) cDNA transcriptome and TSA accessions
Atlantic silverside (Menidia menidia) raw low-coverage genomic sequence accessions	Accession numbers for raw low-coverage genomic sequence reads from 876 different Atlantic silverside individuals
Atlantic silverside RNA-seq reads
Bacterial communities and relative abundances of the pathogen Vibrio coralliilyticus in feces of coral reef fish	Bacterial communities and relative abundances of the pathogen Vibrio coralliilyticus in feces of coral reef fish
Bleached octocoral genotypes	Bleached Octocoral Symbiont Cell Counts
BOWLS sample log	Sample log for specimens collected for genomics analyses
BOWLS sample log	Sample log for specimens collected for genomics analyses
Breviolum antillogorgium microsatellite loci	Microsatellite loci for B. antillogorgium cultures
Brothers Volcano Metagenome-Assembled Genome Accession Numbers	Brothers Volcano Metagenome-Assembled Genome Accession Numbers
BWLD-C7 subsurface microbes	BWLD-C7 subsurface microbes
Ca. Aquarickettsia rohweri transcriptomes
Calanus finmarchicus transcriptomics	Links to a microarray and transcriptome for C. finmarchicus
Candidatus Nitrosopelagicus brevis strain U25
Cannon_2013_T2: NCBI accessions	Hemichordata and Echinodermata NCBI accessions
Cannon_2014_S2: Hemichordata and Echinodermata sample log and accessions	Hemichordata and Echinodermata transcriptome NCBI accessions
Caribbean PaV1 survey	Caribbean wide survey of PaV1 prevalence in adult lobsters, 2006-2007 and 2010-2011
Chemosynthetic biofilm diversity	Samples sequenced from chemosynthetic biofilm communities from deep-sea hydrothermal vents
Community 16S rRNA gene sequences	16S rRNA accessions
Coral 16s rRNA
Coral Associated Microbes on Mo'orean Coral Reefs	Bacteria and Archaea found on coral, sediment, and water in Mo’orea, French Polynesia
Coral cDNA Expressed Sequences	cDNA Expressed Sequence Tags for the corals Acropora palmate and Orbicella faveola
Coral colony sequece accessions: Hidden resilience to recurrent bleaching
Coral colony sequence accessions: The genomics of recovery from coral bleaching
Coral ESVs: Galaxaura	Microbial ESV counts for corals exposed to Galaxaura
Coral ESVs: Sargassum	Microbial ESV counts for corals exposed to Sargassum
Coral images and accession numbers	Species images and accession numbers for tissue, mucus, and holobionts analyzed.
coral life stages - Illumina	Illumina sequenced 16S rRNA genes amplified from different life stages of 2 corals
coral microbe T-RF - biogeography	Hawaiian coral terminal-restriction fragment length polymorphism (T-RFLP) analysis
coral microbe T-RF - temp stress	Terminal restriction fragments from 16S rRNA genes amplified from coral-associated microbes, response to temperature stress
Coral reef seawater microbial communities	Coral reef seawater microbial communities
coral-microbe T-RF - development	Specificity of associations between bacteria and the coral Pocillopora meandrina during early development
coral-microbe T-RF - spawning	T-RFLP, response of the microbial community to coral spawning, lagoon and reef flats, Oahu, 2006-7
Crassostrea virginica gonad MBD-BSseq	GenBank metadata for Eastern oyster gonad methylation and OA
CsRV1 virus genotypes across the Atlantic coast of N and S America
Cultures isolated from A. bipinnata 2008-2016	Symbiodinium cultures isolated from adult colonies of the octocoral Antillogorgia bipinnata in 2008, 2013 and 2016, grown at either 26 or 30 degrees C
Cultures isolated from A. bipinnata 2008-2016	Symbiodinium cultures isolated from adult colonies of the octocoral Antillogorgia bipinnata in 2008, 2013 and 2016, grown at either 26 or 30 degrees C
Cuvierina SRA	Cuvierina SRA, accessions, collection info
Cyanomyovirus genome sequences	Genbank accession numbers for genome sequences of cyanomyoviruses collected from the coastal waters of North America
dataset2_Krug_et_al_2012: Elysia accessions	Elysia spp. accessions for COI, 16S, H3
dataset3_Supp1_Krug_et_al_2011: Elysia sequences	Accessions for COI, 16S, H3 for 18 Elysia species
dataset4_Krug_et_al_2012: Philine sequences	Accessions for 16S for Philine species
dataset5_Vendetti_et_al_2012: Elysia pusilla sequences	Accessions for COI, 16S, H3 from Elysia pusilla and E. spp.
dataset6_Krug_et_al_2013: Sequences	Accessions for COI, H3 for three species complexes
dataset8- Oxynoe sequence data	Species names, sample codes, and collection details for sequenced taxa used in phylogenetic analyses.
Deep Biosphere Eukaryotic rRNA	Sub-seafloor sediment eukaryotic rRNA collected on JOIDES Resolution Legs 201 and 204, R/V Maria Merian at North Pond, and R/V Meteor at the Benguela Upwelling System.
DHAB halocline sediment pyrotags - eukaryotes	454 pyrotags for Eukaryote taxa in deep hypersaline anoxic basin (DHAB) halocline sediments
DHAB halocline sediment pyrotags - prokaryotes	454 pyrotags for Bacterial and Archaeal taxa in deep hypersaline anoxic basin (DHAB) halocline sediments
Diatom amplicon sequencing variants from Narragansett Bay 2008-2014	Diatom amplicon sequencing variants from Narragansett Bay 2008-2014
Diatom Matrix RNAseq	NCBI accessions
Diatom microbiome	Identification of microbiome from different Pseudo-nitzschia species
Diatom microbiome	Identification of microbiome from different Pseudo-nitzschia species
dinoRNAV dynamics in the reef-building coral Porites lobata	dinoRNAV dynamics in the reef-building coral Porites lobata
Disease Exposure Experiment	Acropora cervicornis coral disease exposure experiment
DNA and cDNA (RNA) 18S V4 tag sequences from 5m and DCM
DNA microsatellite alleles - Eelgrass ramets	DNA microsatellite alleles for eelgrass ramets from two sites in MA
DNA microsatellite alleles - Flowering shoots and seeds	DNA microsatellite alleles from flowering shoots and seeds
Doliolid diet: zooplankton abundance	Zooplankton abundances
Domel_2017_T1: Pallenopsis patagonica specimen and outgroups with accessions	Pallenopsis patagonica specimen and outgroups with accessions
DYEatom: Metatranscriptome accessions and assembled contigs
EPR 9 North Plume Particles	Bacterial 16S rRNA sequences from hydrothermal plume particles
EPR 9N Inactive Sulfides	Bacterial 16S rRNA sequences from inactive sulfide chimneys
Etelis spp. rangewide genetic data
ETNP ODZ Metagenomes April 2012	Assembled metagenomes collected in the Eastern Tropical North Pacific Oxygen Deficient Zone in April 2012 on TN278
ETNP Viromes	Accession Numbers of Viral Metagenomes from the ETNP
Eukaryotic viruses encode the ribosomal protein eL40	Eukaryotic viruses encode the ribosomal protein eL40
Eukaryotic viruses encode the ribosomal protein eL40	Eukaryotic viruses encode the ribosomal protein eL40
Evolve and re-sequence experiment - laboratory selection lines	Evolve and re-sequence experiment - laboratory selection lines
Evolve and re-sequence experiment - wild populations	Evolve and re-sequence experiment - wild populations
Experimental coral treatments	DNA results of Pocillopora cf. meandrina and Acropora hyacinthus
Exudate Uptake Incubations - Microbial Abundances (Flow Cytometry)	Exudate Uptake Incubations - Microbial Abundances (Flow Cytometry)
Fe_Vit12_MetaT_Co-Limitation_RossSea_2014	Iron and vitamin B12 metatranscriptomincs co-limitation in Ross Sea waters, 2014
Fragment analysis files from Clinocardium nuttallii microsatellites
FRT-Dcyl-Symb_2014	Dendrogyra cylindrus 23S Illumina 2014 - relative abundance
FRT-Dcyl-Symb_2015-2016	Dendrogyra cylindrus 23S Illumina 2015-16 - relative abundance
GenBank accessions	GenBank accession numbers and links for microbial isolates from sediment samples collected at Paleochori Bay, Milos island, Greece
GenBank accessions from marine sediment samples - Costa Rica Margin	Costa Rica Margin sediment accessions
Gene expression of Eurytemora affinis (saline and freshwater)
Gene expression of Pocillopora damicornis	Gene expression of Pocillopora damicornis
GeoMICS Viromes
Gill 16S rRNA amplicon sequencing	GenBank Short Read Archive (SRA) sequence accession numbers for 16S rRNA gene amplicon data from the gills of Alviniconcha species, Ifremeria nautilei, and Bathymodiolus septemdierum.
Glaucus atlanticus sample voucher log	Glaucus atlanticus sample locations, museum voucher and GenBank accession numbers
Glaucus species COI and 16S positions and bases	Dataset for Glaucus Study II: locality data, GenBank and museum voucher numbers, with molecular synapomorphies
Glaucus spp vouchers and accession numbers	Glaucus specimen collection locations, museum vouchers and GenBank accession numbers
Groundwater microorganism retroelement protein sequences	Protein sequences from diversity-generating retroelements in groundwater microorganisms
Gulf of Alaska copepods: annotated transcriptomes	The dataset includes the annotation files of nine high-quality de novo transcriptomes generated from shotgun assemblies of short-sequence reads.
Halanych-Kocot_2014_T1: NCBI accessions	Antarctic invertebrate collection locations and NCBI SRA accessions
Halanych-Kocot_2014_T3: Best TLR genes from BLASTP search	Best toll-like receptors (TLR) genes from Lophotrochozoa BLASTP search
Halanych-Kocot_2014_T4: Best other LRR genes from BLASTP search	Best other leucine-rich repeat (LRR) genes from BLASTP search
Halanych_2013_T1: NCBI accessions	NCBI accessions
Haloptilus longicornis SRA	H. longicornis SRA, accessions, collection info
haplotype_accession_numbers	Accession numbers for planktonic ciliate haplotypes
Harder_2016_T1: sea spider Pallenopsis sampling sites and COI NCBI accessions	Sea spider Pallenopsis sampling sites and COI NCBI accessions
Havird_2015_T1: NCBI accessions: COX and PXDN	NCBI accessions
Hawaiian reef fish genetic accessions 2016	Genetic accessions at NCBI Genbank
Heterosigma akashiwo acclimation	Heterosigma akashiwo acclimation - BioProject PRJNA377729
HRR 18S full-length sequence BLAST results	HRR 18S full-length sequence BLAST results
HRR Metabarcoding	HRR metatranscriptome
Hurricane Harvey Coral Gene Expression
Invertebrate Barcodes from Papua New Guinea
IODP360 - Annotations
IODP360 - FPKM values
IODP360 - iTAG and metatranscriptome data
IRN-BRU MV1405 Transect 5 BioGeoChem
ITS_sequence_accessions	Diatom ribosomal DNA sequence accession numbers.
Janosik_2013_T2: outgroup species and accessions	Outgroup species and accessions
Janosik_2013_T3: matrix of Odontasteridea morphological characters	Matrix of Odontasteridea morphological characters
Jason-II sample log AT26-10	sample log from Jason-II dives for Sievert
JTMD Mytilus population genetics	Population analysis and metagenomics of Japanese tsunami marine debris mussels
Juan de Fuca Ridge Flank SSU rRNA gene sequences	SSU rRNA gene sequences from marine sediments, marine subseafloor, and deep seawater
Kaneohe Bay RNA virus metagenomes	Pyrosequencing reads (454) of marine RNA virus metagenomes
Kāneʻohe Bay Time-series - microbial community	Kāneʻohe Bay Time-series - microbial community
Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry	Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry
Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry	Kāneʻohe Bay Time-series - phytoplankton and biogeochemistry
Kelletia kelletii: DNA and RNA sequence	Kelletia kelletii: DNA and RNA sequence
Kelletia kelletii: DNA and RNA sequence	Kelletia kelletii: DNA and RNA sequence
Kelletia kelletii: DNA and RNA sequence	Kelletia kelletii: DNA and RNA sequence
kinetoplastid SSU rRNA seq.	Microbial metatranscriptomics: upper and lower halocline water column
Krill barcodes	Euphausiid DNA barcode metadata and accession numbers from global oceans
Lau Basin and Loihi Seamount microbial mats	Metegenomic sequences from Lau Basin low temperature vents and Loihi Seamount.
Lau Basin Bacterial Low Temp Geomicrobiology	Bacterial 16S rRNA sequences from seafloor rocks (silicates and sulfides)
Lebetimonas Genomes	Whole genome sequence data from bacterial isolates from venting fluids at NW Rota Seamount, collected in 2009 and 2010.
Long-term diatom microbiome data and analysis package
MBRS Symbiodinium OTU	Symbiodinium OTU
McIlroy_2016: Symbionts genotypes in Orbicella faveolata	McIlroy_2016: Genotype of symbionts detected in Orbicella faveolata recruits over time
McIlroy_2017: Symbionts genotypes in Orbicella faveolata	McIlroy_2017: Genotype of symbionts detected in Orbicella faveolata recruits
Mesocosm microbial analyses results
Metabarcoding zooplankton at station ALOHA: NCBI SRA accession numbers	NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample
Metabarcoding zooplankton at station ALOHA: OTU tables and fasta files	Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU
Metabolite Uptake Incubations - Microbial Abundances (Flow Cytometry)	Metabolite Uptake Incubations - Microbial Abundances (Flow Cytometry)
Metadata for RNASeq of green crabs in the northeast Pacific	Metadata for RNASeq of green crabs in the northeast Pacific
Metadata for targeted genotyping of green crabs in the northeast Pacific	Metadata for targeted genotyping of green crabs in the northeast Pacific
Metagenome	Metagenomic data
Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities	Metagenome and metatranscriptome sequences from deep-sea hydrothermal vent microbial communities
Metagenome of Bleached and Non-bleached corals
Metagenomic sequences: IODP Site 1244	NCBI accession numbers for metagenomic sequences: IODP Site 1244, Hydrate Ridge, offshore Oregon
Metatranscriptomic nutrient response experiments - 2021 DY131	Metatranscriptomic nutrient response experiments - 2021 DY131
metatranscriptomics - Niskin vs. in situ	Microbial metatranscriptomics: Niskin vs. in situ sampler
metatranscriptomics - upper_lower halocline	Microbial metatranscriptomics: upper and lower halocline water column
Microbe priority experiment counts	Microbe priority experiment counts (OTU counts)
Microbes priority annotations (OTU taxonomy)	Microbes priority annotations (OTU taxonomy)
Microbial Alpha Diversity	Microbial Alpha Diversity
Microbial community composition of the Cinder Cones Cold Seep	Microbial community composition of the Cinder Cones Cold Seep
Microbial eukaryotic diversity: Axial Seamount SRA	Axial seamount SRA
Microbial eukaryotic diversity: Gorda Ridge SRA	Gorda Ridge SRA
Microbial eukaryotic diversity: Mid-Cayman Rise SRA dataset	18S rRNA amplicon sequencing of microbial eukaryotes
Microbial eukaryotic focused metatranscriptome data
Microbial incubation diversity and geochemistry	Microbial diversity and geochemistry of marine sediment mesocosm, Cape lookout bight, North Carolina
Microbial isolates	Microbial isolates from sediment samples collected at Paleochori Bay, Milos island, Greece
Microbiome dynamics of coral reef and cleanerfish	Microbiome dynamics of coral reef and cleanerfish
Microbiomes of Caribbean sponges	Microbiomes sponges 2013-2014
Microsatellite primers for Pollicipes elegans	Microsatellite primer sequences from Pollicipes elegans
MMETSP transcriptome sequences	Eukaryote transcriptome assemblies and associated metadata available on iMicrobe
Molecular identification of genetic variants of Neocalanus flemingeri
Molecular identification of genetic variants of Neocalanus flemingeri
Mollusc voucher and accession numbers	Mollusc museum voucher and GenBank accession numbers
MtCOI sequence accessions - Pollicipes elegans	Cytochrome oxidase I DNA sequences from Pollicipes elegans
Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female	Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female
NCBI accession numbers for RNAseq data from five coral species experimentally exposed to SCTLD	NCBI accession numbers for RNAseq data from five coral species experimentally exposed to SCTLD
NCBI accession numbers for S. arcuata and S. meunieri	NCBI accession numbers for S. arcuata and S. meunieri
NCBI accessions for RNAseq data from apparently healthy and SCTLD-affected Montastraea cavernosa
Neocalanus flemingeri incubation experiment: gene expression
Nitrosopelagicus brevis genome	NCBI accession number link to the closed genome of Nitrosopelagicus brevis CN25
North Atlantic subseafloor clay metagenomes and metatranscriptomes	16S rRNA gene datasets, metagenomes, and metatranscriptomes
Nudibranch accession numbers	Nudibranch accession numbers
OA Samples	Accession numbers from acidification mesocosms and original in situ samples from coastal and offshore water station at the Pivers Island Coastal Observatory January to February 2017
OC1703A Sediment 16S rRNA and 16S rRNA gene amplicon sequences	OC1703A Sediment 16S rRNA and 16S rRNA gene amplicon sequences
OC1703A Sediment MG-MT	OC1703A Sediment MG-MT
OC1703A Sediment MG-MT	OC1703A Sediment MG-MT
OC1703A Sediment nifH amplicon sequences	OC1703A Sediment nifH amplicon sequences
OTU table for 18S rRNA gene tag sequences from DNA and RNA
Oyster Cohort Genetics	Database of DNA microsatellite alleles for hatchery-produced oyster cohorts
Oyster Cohort Traits	Performance traits (e.g., survival, growth, size) for hatchery-produced oyster cohorts
P. xiphias SRA	P. xiphias SRA, accessions, collection info
Palau lakes: invertebrate barcodes	Palau lakes: invertebrate barcodes
Palau lakes: voucher summary	Palau lakes: voucher summary
Peru Margin iTAGs	Fungal iTAG analyses on Peru Margin sediment core samples
planktonic ciliates: DNA accessions	Planktonic ciliate DNA sequence accession numbers at NCBI GenBank
Pocillopora sequences from 2019
Poland_2013: Polyp count by symbiont type summary	Polyp count by symbiont type summary
Poland_2013: Polyp count with multiple symbiont types	Polyp count with multiple symbiont types
Poland_2013: Symbiont types by site and month	Symbiont types by site and month
Pollicipes elegans aggregation genotypes	Genotype data for the three adult barnacle aggregations - Pollicipes elegans
Pollicipes elegans larval genotypes	Larval genotype data for Pollicipes elegans
Polychaete DNA sequences	DNA sequence data deposited on GenBank for polychaetes used in the project studying the evolution and mechanics of burrowing.
Pooled sequencing data from field-collected Eurytemora affinis
Population genetic surveys of Zostera marina	A re-sampling of historical population genetic surveys of Zostera marina from Bodega, Tomales, and San Francisco Bays USA
Prokaryotic and eukaryotic abundance in BATS microbial communities
Pro_ancestor	Clones of Prochlorococcus MIT9312 and link to BioProject
Pseudo-nitzschia amplicon sequence variants (ASVs)	Pseudo-nitzschia asv
Pseudo-nitzschia diversity and viral titers
Pseudo-nitzschia presence/absence of amplicon sequence variants (ASVs)	Pseudo-nitzschia asv
Pseudo-nitzschia spp. presence-absence and environmental data
pyrosequencing clade	Symbiodinium sequence abundance in St. John, US Virgin Islands from 1994-2010
Quantitative PCR: Dilution test	Quantitative PCR: Dilution test
Quantitative PCR: Field Validation	Quantitative PCR: Individuals
Quantitative PCR: Individuals	Quantitative PCR: Individuals
RADseq data from Atlantic silversides used for linkage and QTL mapping
Raw low-coverage whole genome sequencing reads
Raw low-coverage whole genome sequencing reads
RB-TnSeq Data
Red Invasive Seaweed - Raw Genotypes	The genotypes from 9 microsatellites generated on individuals of the red invasive seaweed Gracilaria vermiculophylla.
Reef biogeochemistry, metabolomics, and metagenomics	Reef biogeochemistry, metabolomics, and metagenomics
Reef biogeochemistry, metabolomics, and metagenomics	Reef biogeochemistry, metabolomics, and metagenomics
Reef biogeochemistry, metabolomics, and metagenomics	Reef biogeochemistry, metabolomics, and metagenomics
Reef Fish Genetic Accessions 2019	Hawaiian Reef Fish Genetic Accessions
Reef fish NCBI genetic sequence accession numbers
RHB_ostracods	Ostracod species from the Ron Brown cruise - Sargasso Sea
RNA sequence accessions at NCBI
RNA sequences	NCBI RNA accessions for multi-stressor conditions of polar fishes
RNAseq data used to identify viral genomes	Alphaflexivirus Genomes in Stony Coral Tissue Loss Disease-Affected, Disease-Exposed, and Disease-Unexposed Coral Colonies in the U.S. Virgin Islands
RNASeq Exp5	Predicted regulon of the regulatory RNA ryhB in Vibrio fischeri
Rockfish microhaplotype sequences	Links to sequence files associated with this project
Ross Sea sequences	Ross Sea sequences link
Salp genome and transcriptome	Antarctic salp genome and RNAseq transcriptome
Sample Accession Numbers	Project accession and library information on each experimental sample
Sample key: Dcyl_Symb_2014	Dendrogyra cylindrus 23S Illumina 2014 sample key
Sample log	Metadata from sediment samples collected at Paleochori Bay, Milos island, Greece
Samples Sequenced for Metabarcoding	Cyanobacterial and diatom samples sequenced for metabarcoding
Santa Monica Bay 18S-V4 sequencing
SBDOM11 mini-remineralization expt.	bacterial abundance, growth rates, and DOC from SBDOM11 cruise
SCTLD rapid microbiome characterization	SCTLD microbiome
Seagrass Microbiome Data
Seawater data and site descriptions	Site descriptions and physical environmental conditions of reefs where sampling occurred.
sea_fan_parasite_sequences	Accession numbers for Labyrinthulomycetes detected in sea fans
sea_fan_sequences	Accession numbers for Gorgonia ventalina (sea fan) sequencing data
Sedtrap Metagenomes	Marine sediment trap metagenomes
Sedtrap Metagenomes	Marine sediment trap metagenomes
Sedtrap Metagenomes	Marine sediment trap metagenomes
SEEPC Bivalve DNA Barcoding Results	Bivalve larvae DNA barcode results
Sequencing Reads	Accession numbers
SERC 2019 viral dilution incubations	Gene copy number counts and 16S analyses of July 2019 Rhode River surface water incubated with or without viral dilution
SERC time series	Water quality data, gene copy number counts, and 16S analyses from Rhode River samples collected at SERC
SIMCO 1 and 2: Taxonomic transcript bins	Taxonomic binning of transcripts from samples collected during the SIMCO1 and SIMCO2
SIMCO 1 and 2: Transcripts per liter	Transcript counts per liter from samples collected during the SIMCO1 and SIMCO2
SIMCO metatranscriptome sequence accessions	SIMCO metatranscriptome sequence accessions
Single amplified genomes	Single amplified genomes (SAGs)
Single-cell genomics of Chloroflexi	Chloroflexi accessions
Sinking particle sample information for BATS microbial communities
South China Sea 16S	16S gene sequencing of microbial communities from South China Sea sediments
Sponge holobiont accessions and metadata	Sponge holobiont accessions and metadata
Sponge Symbiont Carbon and Nutrient Cycling	Sponge Symbiont Carbon and Nutrient Cycling
Sponge-Associated Microbial Communities (via 16S-V4 rRNA amplicon sequencing) Following Storm-Driven Flooding
SPOT virus 18S rDNA peak abund	SPOT Microbial Observatory Protist 18S rDNA TRFLP relative peak abundance
SPOT virus 3H peak abund	SPOT Microbial Observatory Myovirus g23 3' TRFLP relative peak abundance
SPOT virus 5H peak abund	SPOT Microbial Observatory Myovirus g23 5' TRFLP relative peak abundance
SPOT virus ARISA	SPOT Microbial Observatory Bacterial ARISA relative peak abundance
ssDNA-dsDNA viromes	ssDNA-dsDNA viromes from the Great Lakes, off Bermuda and the South Pacific
SSU rRNA Gene Sequencing from SPOT	SSU rRNA Gene Sequencing from SPOT
SSU rRNA Gene Sequencing from SPOT	SSU rRNA Gene Sequencing from SPOT
Substrate-specific metabolic responses of model marine bacteria	Substrate-specific metabolic responses of model marine bacteria - metadata for transcriptomic expression data
Sulfitobacter phage accessions	Sulfitobacter phage accessions
Switch RNAseq	Transcriptional profile of marine bacterium Ruegeria pomeroyi in a three-member co-culture study
Symbiodiniaceae communities (via ITS-2 rDNA amplicon sequencing) in reef-associated fish feces, corals, water and sediments
Symbiodiniaceae communities in corals with ITS-2 rDNA amplicon sequencing
Symbiont accession numbers	Accession numbers of symbiotic algae in coral
Symbiont type in recovering corals	symbiont type in recovering Porites divaricata corals
Synechococcus accessions	Synechococcus accessions
Synechococcus growth and genetic sequence accessions from pCO2 experiments
T. pseudonana starve-recover experiments: Cell information
T. rotula Common Garden Experiment	T. rotula Common Garden Experiment
T. rotula microbiome global sample	T. rotula microbiome global sample
Thalassiosira Fe and light limitation - ENA accessions	ENA accessions for transcriptomes of T. oceanica and T. weissflogii grown in varied Fe and light
Thalassiosira Fe and light limitation - NCBI and iMicrobe accessions	NCBI and iMicrobe accessions for transcriptomes of T. oceanica and T. weissflogii grown in varied Fe and light
Thaumarchaea transcriptomes	Thaumarchaea transcriptomes
The Long Term Phytoplankton Evolution Experiment: Genomic Analysis	The Long Term Phytoplankton Evolution Experiment: Genomic Analysis
Tidal study of seawater microbial communities
Transcription in marine bacteria	Transcripts in four cultivated marine bacteria
Transcriptomes of co-cultured marine microbes and Ruegeria pomeroyi DSS-3	Transcriptomes of co-cultured marine microbes and Ruegeria pomeroyi DSS-3
Transcriptomic response of Emiliania huxleyi to HHQ	Transcriptomic response of Emiliania huxleyi to HHQ
Transcriptomic responses to saxitoxin
Transcriptomics of Phytoplankton Cultures Grown on Various Phosphorus Sources	Transcriptomics of Phytoplankton Cultures Grown on Various Phosphorus Sources
Transplant 16S Sequences	16S sequence data in the form of fastq.gz files for all samples collected and sequenced as part of the Varadero Reef transplant experiment
Trichodesmium AHL metatranscriptomes_AE1409	GenBank Trichodesmium accessions and associated metadata
Trichodesmium consortia FASTq accessions	NCBI accession numbers for raw RNA-seq fastq files derived from laboratory-maintained Trichodesmium erythraeum cultures
Trichodesmium sequence accessions	GenBank Trichodesmium accessions and associated metadata
USVI Time-series	USVI Time-series
V4 SSU rRNA gene primer validation for reef seawater	Partial SSU rRNA genes of bacteria and archaea from reef seawater samples produced using 515F/806R and 515F/806RB primers
Vent_CSP_SAG	Single amplified genomes (SAGs) of microbial cells isolated from Crab Spa, East Pacific Rise
Whelan_2014_T3: toxin genes identified in Nemertean species	Toxin genes identified in Nemertean species
Whole genome sequence data for Pisaster ochraceus
Whole genome sequence data for Pisaster ochraceus
Whole Genome Sequencing of Eelgrass Bodega and Tomales Bay	Whole Genome Sequencing of Eelgrass Bodega and Tomales Bay
Wild copepod pool-seq data	Pool-seq data from wild populations of copepods in the North Sea
WS1209 strains	Microbial culture collection, strain IDs, locations and depth from cruise WB1209
ZEN 2014 Site Survey Data	Eelgrass 2014 Site Survey Data
Zostera experiment community biomass	Diversity and biomass of eelgrass inhabitants
Zostera marina whole genome resequencing	Zostera marina whole genome resequencing

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Instrument: Automated DNA Sequencer